mRNA_H-canaliculatus_M_contigs75955.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75955.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75955.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Match: Myosin (D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.680e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 GKSAGMGPVNQSILISGESGAGKTESTKFVMRYVHPV 111
            GKSAGMGPVNQSILISGESGAGKTESTKFVMRY+  V
Sbjct:  168 GKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTV 204
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BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Match: Myosin (motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDB8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.680e-12
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 GKSAGMGPVNQSILISGESGAGKTESTKFVMRYVHPV 111
            GKSAGMGPVNQSILISGESGAGKTESTKFVMRY+  V
Sbjct:  117 GKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTV 153
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BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Match: Myosin (motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBZ3_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.120e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 GKSAGMGPVNQSILISGESGAGKTESTKFVMR 96
            GKSAGMGPVNQSILISGESGAGKTESTKFVMR
Sbjct:  168 GKSAGMGPVNQSILISGESGAGKTESTKFVMR 199
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BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Match: Myosin-like (protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5Z6_PLAHL)

HSP 1 Score: 55.1 bits (131), Expect = 1.530e-7
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 GKSAGMGPVNQSILISGESGAGKTESTKFVMRYV 102
            G+S+  GP NQSIL+SGESGAGKTE+TKFVM Y+
Sbjct:  170 GRSSNGGPANQSILVSGESGAGKTETTKFVMNYL 203
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BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Match: Myosin (motor domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y916_AURAN)

HSP 1 Score: 52.4 bits (124), Expect = 8.510e-7
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    7 SAGMGPVNQSILISGESGAGKTESTKFVMRYV 102
            SA  GP +QS+LISGESGAGKTE+TKFVMRY+
Sbjct:   90 SARRGPRDQSVLISGESGAGKTETTKFVMRYL 121
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BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0D6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.000e-6
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    7 SAGMGPVNQSILISGESGAGKTESTKFVMRYV 102
            SAG G  +QSILISGESGAGKTESTKFVMRY+
Sbjct:  172 SAGGGNGSQSILISGESGAGKTESTKFVMRYL 203
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BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Match: Aste57867_3019 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K9V2_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.870e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   22 PVNQSILISGESGAGKTESTKFVMRYVHPVDLLVSTH 132
            P NQSIL+SGESGAGKTE+TKF+M+Y+  V    S H
Sbjct:  167 PSNQSILVSGESGAGKTETTKFIMKYLASVSQSKSMH 203
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BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2A7B1_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 2.560e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   28 NQSILISGESGAGKTESTKFVMRYVHPVDLLVSTHP 135
            NQSI++SGESGAGKT+S K++MRY   +D+L  T P
Sbjct:  154 NQSIIVSGESGAGKTQSAKYIMRYFATIDMLDKTFP 189
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Match: Myosin (motor domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDW9_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 3.350e-6
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 GKSAGMGPVNQSILISGESGAGKTESTKFVMRYVHPV 111
            G SA +   +QSILISGESGAGKTESTKFV+RY+  V
Sbjct:  107 GSSASIVSADQSILISGESGAGKTESTKFVLRYLTSV 143
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCG0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.500e-6
Identity = 22/30 (73.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:   22 PVNQSILISGESGAGKTESTKFVMRYVHPV 111
            P+NQSIL+SGESGAGKTE+TKF+M+Y+  V
Sbjct:  166 PLNQSILVSGESGAGKTETTKFIMKYLAAV 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75955.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Myosin3.680e-1291.89D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=... [more]
Myosin3.680e-1291.89motor domain-containing protein n=2 Tax=Ectocarpus... [more]
Myosin6.120e-11100.00motor domain-containing protein n=1 Tax=Ectocarpus... [more]
Myosin-like1.530e-773.53protein n=1 Tax=Plasmopara halstedii TaxID=4781 Re... [more]
Myosin8.510e-778.13motor domain-containing protein (Fragment) n=1 Tax... [more]
Hypothetical1.000e-684.38protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Aste57867_30191.870e-664.86protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized2.560e-661.11protein (Fragment) n=1 Tax=Neocallimastix californ... [more]
Myosin3.350e-670.27motor domain-containing protein n=1 Tax=archaeon T... [more]
Uncharacterized3.500e-673.33protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75955contigH-canaliculatus_M_contigs75955:97..237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTS1
PFAMsFYVE,IQ,Myosin_head,WD40
Model size141
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
Exons1
Evalue8.69e-10
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size126
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854097.2147095-UTR-H-canaliculatus_M_contigs75955:96..1111696854097.2147095-UTR-H-canaliculatus_M_contigs75955:96..111Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75955 97..111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854097.2305455-CDS-H-canaliculatus_M_contigs75955:111..2371696854097.2305455-CDS-H-canaliculatus_M_contigs75955:111..237Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75955 112..237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75955.1.1prot_H-canaliculatus_M_contigs75955.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75955 112..237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75955.1.1

>prot_H-canaliculatus_M_contigs75955.1.1 ID=prot_H-canaliculatus_M_contigs75955.1.1|Name=mRNA_H-canaliculatus_M_contigs75955.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp
MGPVNQSILISGESGAGKTESTKFVMRYVHPVDLLVSTHPA*
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mRNA from alignment at H-canaliculatus_M_contigs75955:97..237+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75955.1.1 ID=mRNA_H-canaliculatus_M_contigs75955.1.1|Name=mRNA_H-canaliculatus_M_contigs75955.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=141bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75955:97..237+ (Hapterophycus canaliculatus Oshoro7m male)
GGGAAGTCTGCGGGCATGGGACCGGTGAACCAGTCGATCCTCATCTCCGG
AGAAAGCGGCGCCGGAAAAACGGAGAGCACCAAATTCGTCATGAGGTACG
TGCACCCCGTCGACTTGCTCGTTTCCACGCACCCAGCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75955:97..237+

>mRNA_H-canaliculatus_M_contigs75955.1.1 ID=mRNA_H-canaliculatus_M_contigs75955.1.1|Name=mRNA_H-canaliculatus_M_contigs75955.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75955:97..237+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGGACCGGTGAACCAGTCGATCCTCATCTCCGGAGAAAGCGGCGCCGG
AAAAACGGAGAGCACCAAATTCGTCATGAGGTACGTGCACCCCGTCGACT
TGCTCGTTTCCACGCACCCAGCGTGA
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