mRNA_H-canaliculatus_M_contigs7595.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7595.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7595.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7595.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB93_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 3.280e-44
Identity = 93/136 (68.38%), Postives = 102/136 (75.00%), Query Frame = 1 
Query:  298 SPYATSGISG-GAPLMHQGGXXXXXXXXXXXXXXAGMPPGPSNRHQVVRQRIDRTESGNKWVVLVEASLRLPHTDGPTFKQFTLMIQNCLNNYNGDVGAEVARALGTCLDPRVFDPSDIKCAQKRMANIYSRFRRG 702
            S YA S     GA LM QG XXXXX          G PP PSNRH+ +RQRIDRTE  NKWVVLV+ASLRLP  DG TF+ FT MIQN LNNYNGDVGAEVARALG+CLDPRVFDP+DIK AQ+RMA+I SRF+ G
Sbjct:   97 SSYAASNSGPIGAVLMQQGAXXXXXGVGAQGPGP-GAPP-PSNRHEGIRQRIDRTEPANKWVVLVDASLRLPPGDGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSRFQDG 230
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BLAST of mRNA_H-canaliculatus_M_contigs7595.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ5_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.350e-42
Identity = 109/184 (59.24%), Postives = 121/184 (65.76%), Query Frame = 1 
Query:  172 ARGGVAVAETYNTVPTRQVPTQQPPGVLSHDPALRTAGAV-----NPSPYATSGISG-GAPLMHQG-GXXXXXXXXXXXXXXAGMPPGPSNRHQVVRQRIDRTESGNKWVVLVEASLRLPHTDGPTFKQFTLMIQNCLNNYNGDVGAEVARALGTCLDPRVFDPSDIKCAQKRMANIYSRFRRG 702
            AR GVA  E Y+  P ++                           N S YA S     GA LM QG GXXXXXXXXXXXXXX      PSNRH+ +RQRIDRTE  NKWVVLV+ASLRLP  DG TF+ FT MIQN LNNYNGDVGAEVARALG+CLDPRVFDP+DIK AQ+RMA+I SRF+ G
Sbjct:  195 ARAGVATGEAYDEFPPKRKQVXXXXXXXXXXXXXXXXXXXXXXXXNASSYAASNSGPTGAMLMQQGAGXXXXXXXXXXXXXXXXXXAPPSNRHEGIRQRIDRTEPANKWVVLVDASLRLPPGDGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSRFQHG 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7595.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.280e-4468.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.350e-4259.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7595contigH-canaliculatus_M_contigs7595:3019..3723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size705
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004740.1
Cds size705
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854097.1852038-CDS-H-canaliculatus_M_contigs7595:3018..37231696854097.1852038-CDS-H-canaliculatus_M_contigs7595:3018..3723Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7595 3019..3723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7595.1.1prot_H-canaliculatus_M_contigs7595.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7595 3019..3723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7595.1.1

>prot_H-canaliculatus_M_contigs7595.1.1 ID=prot_H-canaliculatus_M_contigs7595.1.1|Name=mRNA_H-canaliculatus_M_contigs7595.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=235bp
MKIRQMQAMQQTTIAAAQGSFPGGPVPAMTAAAGAAPPAPMPGVRSSLGG
GPAVVLEARGGVAVAETYNTVPTRQVPTQQPPGVLSHDPALRTAGAVNPS
PYATSGISGGAPLMHQGGGGGSGGSSSGSGGGAGMPPGPSNRHQVVRQRI
DRTESGNKWVVLVEASLRLPHTDGPTFKQFTLMIQNCLNNYNGDVGAEVA
RALGTCLDPRVFDPSDIKCAQKRMANIYSRFRRG*
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mRNA from alignment at H-canaliculatus_M_contigs7595:3019..3723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7595.1.1 ID=mRNA_H-canaliculatus_M_contigs7595.1.1|Name=mRNA_H-canaliculatus_M_contigs7595.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=705bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7595:3019..3723+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGATTCGGCAAATGCAAGCAATGCAGCAGACGACGATCGCGGCTGC
GCAGGGATCATTCCCAGGTGGACCTGTGCCAGCCATGACAGCTGCGGCAG
GGGCTGCACCCCCCGCTCCGATGCCTGGTGTGAGAAGCTCGTTAGGAGGT
GGGCCAGCAGTGGTTTTGGAAGCGCGCGGCGGCGTGGCTGTTGCGGAAAC
TTACAACACGGTACCTACGCGGCAGGTTCCCACGCAGCAGCCACCAGGGG
TCCTGTCACACGATCCGGCATTGCGCACCGCAGGCGCGGTAAACCCTTCT
CCCTACGCCACAAGCGGCATATCAGGAGGTGCACCACTGATGCATCAGGG
TGGCGGAGGGGGCAGCGGCGGCAGCAGCAGCGGCAGCGGAGGTGGTGCTG
GGATGCCGCCAGGACCGAGCAATCGCCATCAGGTTGTGAGGCAACGAATC
GACCGCACAGAATCGGGGAACAAGTGGGTCGTTCTTGTGGAGGCGTCGCT
CCGGCTACCGCACACCGACGGCCCCACGTTCAAGCAGTTTACTTTGATGA
TTCAGAATTGTCTCAACAATTACAACGGGGATGTGGGCGCTGAGGTTGCT
CGGGCCCTGGGAACCTGTCTCGATCCTCGTGTGTTCGATCCTTCAGATAT
CAAGTGCGCGCAGAAAAGAATGGCAAATATTTACTCCCGATTTCGGCGTG
GTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7595:3019..3723+

>mRNA_H-canaliculatus_M_contigs7595.1.1 ID=mRNA_H-canaliculatus_M_contigs7595.1.1|Name=mRNA_H-canaliculatus_M_contigs7595.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=705bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7595:3019..3723+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGATTCGGCAAATGCAAGCAATGCAGCAGACGACGATCGCGGCTGC
GCAGGGATCATTCCCAGGTGGACCTGTGCCAGCCATGACAGCTGCGGCAG
GGGCTGCACCCCCCGCTCCGATGCCTGGTGTGAGAAGCTCGTTAGGAGGT
GGGCCAGCAGTGGTTTTGGAAGCGCGCGGCGGCGTGGCTGTTGCGGAAAC
TTACAACACGGTACCTACGCGGCAGGTTCCCACGCAGCAGCCACCAGGGG
TCCTGTCACACGATCCGGCATTGCGCACCGCAGGCGCGGTAAACCCTTCT
CCCTACGCCACAAGCGGCATATCAGGAGGTGCACCACTGATGCATCAGGG
TGGCGGAGGGGGCAGCGGCGGCAGCAGCAGCGGCAGCGGAGGTGGTGCTG
GGATGCCGCCAGGACCGAGCAATCGCCATCAGGTTGTGAGGCAACGAATC
GACCGCACAGAATCGGGGAACAAGTGGGTCGTTCTTGTGGAGGCGTCGCT
CCGGCTACCGCACACCGACGGCCCCACGTTCAAGCAGTTTACTTTGATGA
TTCAGAATTGTCTCAACAATTACAACGGGGATGTGGGCGCTGAGGTTGCT
CGGGCCCTGGGAACCTGTCTCGATCCTCGTGTGTTCGATCCTTCAGATAT
CAAGTGCGCGCAGAAAAGAATGGCAAATATTTACTCCCGATTTCGGCGTG
GTTAG
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