mRNA_H-canaliculatus_M_contigs75940.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75940.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75940.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Match: NADP-dependent (malic enzyme (Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2FCF7_9RHOB)

HSP 1 Score: 306 bits (785), Expect = 1.250e-98
Identity = 149/175 (85.14%), Postives = 162/175 (92.57%), Query Frame = 1 
Query:    1 QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARHVRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMNIDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNKVHIVSPSITARGLLN 525
            Q+LGRG LHPVGALSMMILEDGPLFI DTHVHTEPTPQQLAEI IGAARHVRRFG++P+IALC+ SQFGNQP GTG + RAAL+ILDA   DF Y+GEMNID ALDPELRARI+P+GRL+GAANVL+FAHADAASGVRNILKMKGGGLEVGPILMGMGN+ HIVSPSITARGLLN
Sbjct:  462 QVLGRGALHPVGALSMMILEDGPLFIGDTHVHTEPTPQQLAEITIGAARHVRRFGIEPKIALCAQSQFGNQPGGTGERVRAALDILDASQTDFAYEGEMNIDAALDPELRARILPQGRLDGAANVLIFAHADAASGVRNILKMKGGGLEVGPILMGMGNRAHIVSPSITARGLLN 636
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Match: NADP-dependent (malic enzyme n=3 Tax=Roseobacter TaxID=2433 RepID=A0A858SW28_9RHOB)

HSP 1 Score: 290 bits (742), Expect = 3.920e-91
Identity = 140/175 (80.00%), Postives = 154/175 (88.00%), Query Frame = 1 
Query:    1 QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARHVRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMNIDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNKVHIVSPSITARGLLN 525
            Q+LG   LHPVGALSMMILEDGPLF+ADT VH  P PQQ+AEI IGAARHVRRFG++P+IA CS SQFGN+  GTG + RAAL +LD GGHDF Y+GEMNIDTALDPELRARI+P  R+ GAANVL+FAHADAASGVRNILKMKGGGLEVGPILMGMGN+ HIVSPSITARGLLN
Sbjct:  570 QVLGTDGLHPVGALSMMILEDGPLFVADTQVHLHPDPQQIAEIAIGAARHVRRFGVEPRIAFCSQSQFGNKGEGTGGRLRAALRLLDQGGHDFCYEGEMNIDTALDPELRARILPANRMEGAANVLIFAHADAASGVRNILKMKGGGLEVGPILMGMGNRAHIVSPSITARGLLN 744
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Match: Malate (dehydrogenase (Oxaloacetate-decarboxylating)(NADP+) n=16 Tax=Sulfitobacter TaxID=60136 RepID=A0A1I1XAI7_9RHOB)

HSP 1 Score: 290 bits (741), Expect = 5.510e-91
Identity = 139/175 (79.43%), Postives = 155/175 (88.57%), Query Frame = 1 
Query:    1 QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARHVRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMNIDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNKVHIVSPSITARGLLN 525
            Q+LGR  LHP GALSMMILEDGPLFI DT VH  PTP+Q+AEI IGAARHVRRFG++P++ALCS SQFGNQ   TG + RAA+++LD GGHDF Y+GEMNIDTALDPELRAR++P  R+ GAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGN+ HIVSPSITARGLLN
Sbjct:  570 QVLGREGLHPQGALSMMILEDGPLFITDTQVHLRPTPEQIAEIAIGAARHVRRFGIEPKVALCSQSQFGNQTDSTGNRLRAAIKLLDEGGHDFCYEGEMNIDTALDPELRARLLPSNRMEGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNRAHIVSPSITARGLLN 744
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Match: NADP-dependent (malic enzyme n=1 Tax=Ascidiaceihabitans donghaensis TaxID=1510460 RepID=A0A2R8BAV9_9RHOB)

HSP 1 Score: 287 bits (735), Expect = 4.240e-90
Identity = 143/175 (81.71%), Postives = 157/175 (89.71%), Query Frame = 1 
Query:    1 QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARHVRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMNIDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNKVHIVSPSITARGLLN 525
            QILGR  LHPVGALSMMILEDGPLFIADTHVH EP+  +LAEIV GAARHVRRFGL+P+IALC+ SQFGNQP G+GA+ R A+  LDA   DF Y+GEMNIDTALDPELR RIMP+GR++GAANVLVFA+ADAASGVRNILKMKGGGLEVGPILMGMGN+ HIVSPSITARGLLN
Sbjct:  570 QILGRKGLHPVGALSMMILEDGPLFIADTHVHMEPSASELAEIVEGAARHVRRFGLEPRIALCTQSQFGNQPGGSGARMREAIAHLDASPRDFCYEGEMNIDTALDPELRQRIMPDGRMDGAANVLVFANADAASGVRNILKMKGGGLEVGPILMGMGNRAHIVSPSITARGLLN 744
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BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Match: NADP-dependent (malic enzyme n=2 Tax=unclassified Sulfitobacter TaxID=196795 RepID=A0A345QJB6_9RHOB)

HSP 1 Score: 287 bits (735), Expect = 4.240e-90
Identity = 139/175 (79.43%), Postives = 155/175 (88.57%), Query Frame = 1 
Query:    1 QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARHVRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMNIDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNKVHIVSPSITARGLLN 525
            Q+LGR  L P GALSMMILEDGPLFIADT VH  P PQQ+AEI IGAARHVRRFG++P++ALCS SQFGNQ  GTG + RAA+E+LDAG +DF+Y+GEMNIDTALDPELR R+ P+ R+ GAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGN+ HIVSPSITARGLLN
Sbjct:  570 QVLGRDGLRPHGALSMMILEDGPLFIADTQVHLHPNPQQIAEIAIGAARHVRRFGIEPKVALCSQSQFGNQGEGTGGRLRAAIELLDAGNNDFSYEGEMNIDTALDPELRKRLFPQNRMEGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNRAHIVSPSITARGLLN 744
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Match: NAD-dependent (malic enzyme n=3 Tax=Roseobacter TaxID=2433 RepID=F7ZIG3_ROSLO)

HSP 1 Score: 285 bits (729), Expect = 3.260e-89
Identity = 139/175 (79.43%), Postives = 154/175 (88.00%), Query Frame = 1 
Query:    1 QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARHVRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMNIDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNKVHIVSPSITARGLLN 525
            QILG  +LHPVGALSMMILEDGPLFIADT VH  PTP+++AEI IGAARHVRRFG++P+IA CS SQFGN+  GTG + R A+E+LD G HDF Y+GEMNIDTALD ELRARI+P  R+ GAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGN+ HIVSPSITARGLLN
Sbjct:  570 QILGGKNLHPVGALSMMILEDGPLFIADTQVHLHPTPEEIAEIAIGAARHVRRFGVEPKIAFCSQSQFGNKGDGTGGRLRGAIELLDRGNHDFCYEGEMNIDTALDAELRARILPGNRMEGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNRAHIVSPSITARGLLN 744
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Match: NADP-dependent (malic enzyme n=9 Tax=Sulfitobacter TaxID=60136 RepID=A0A5P9F3J4_9RHOB)

HSP 1 Score: 282 bits (722), Expect = 3.520e-88
Identity = 136/175 (77.71%), Postives = 152/175 (86.86%), Query Frame = 1 
Query:    1 QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARHVRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMNIDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNKVHIVSPSITARGLLN 525
            Q+LGR  L P GALSMMILEDGPLFIADTHVH  PTP+Q+ E+  GAARHVRRFG++P+IA CS SQFGNQ  GTG + RAA+ ILDA G DF Y+GEMNIDTALDP+LRAR++P  R+NGAANVL+FAHADAASGVRNILKMKGGGLEVGPILMGMGN+ HIVSPSIT RGLLN
Sbjct:  570 QVLGRDGLRPHGALSMMILEDGPLFIADTHVHLHPTPEQIVEVARGAARHVRRFGIEPKIAFCSQSQFGNQGEGTGGRLRAAIGILDAAGDDFCYEGEMNIDTALDPDLRARLLPTNRMNGAANVLIFAHADAASGVRNILKMKGGGLEVGPILMGMGNRAHIVSPSITPRGLLN 744
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Match: NADP-dependent (malic enzyme n=1 Tax=Aliiroseovarius sp. TaxID=1872442 RepID=A0A7C5R5C8_9RHOB)

HSP 1 Score: 265 bits (677), Expect = 3.780e-88
Identity = 124/175 (70.86%), Postives = 150/175 (85.71%), Query Frame = 1 
Query:    1 QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARHVRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMNIDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNKVHIVSPSITARGLLN 525
            Q+LG   LHP+ ALS+M+LEDGPLFIADTHVH EPTP+++AE  I AARHVRRFG+ PQ+ALC++SQFGN    +G  ARAALEILD    DFTY+GEM++D ALDP++RAR++PE R+ G ANVL+FA+ADAASGVRN+LKMK GGLEVGPILMGMGN+ H+V+PSITARGLLN
Sbjct:    6 QVLGTDGLHPIAALSLMLLEDGPLFIADTHVHPEPTPEEIAETAIAAARHVRRFGITPQVALCAYSQFGNLDNQSGRLARAALEILDREPRDFTYEGEMHVDAALDPKVRARLLPESRMEGPANVLIFANADAASGVRNVLKMKAGGLEVGPILMGMGNRAHVVTPSITARGLLN 180
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Match: Phosphate (acetyltransferase n=20 Tax=root TaxID=1 RepID=A3SSH3_SULSN)

HSP 1 Score: 281 bits (719), Expect = 9.750e-88
Identity = 136/175 (77.71%), Postives = 153/175 (87.43%), Query Frame = 1 
Query:    1 QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARHVRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMNIDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNKVHIVSPSITARGLLN 525
            Q+LGR    P GALS+MILEDGPLFIADT VH  PTP+Q+AEI IGAARHV+RFG++P+IALCS SQFGNQ  G+G + RAAL +LDAG HDF Y+GEMNID ALDPELR+R++P  R+ GAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGN+ HIVSPSITARGLLN
Sbjct:  570 QVLGRDGRRPHGALSLMILEDGPLFIADTQVHLHPTPEQIAEIAIGAARHVQRFGIEPKIALCSQSQFGNQGEGSGKRLRAALRLLDAGNHDFCYEGEMNIDAALDPELRSRLLPSNRMEGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNRAHIVSPSITARGLLN 744
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Match: NADP-dependent (malic enzyme n=1 Tax=Roseobacter sp. YSTF-M11 TaxID=2859783 RepID=UPI001C5D181C)

HSP 1 Score: 280 bits (716), Expect = 2.700e-87
Identity = 135/175 (77.14%), Postives = 151/175 (86.29%), Query Frame = 1 
Query:    1 QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARHVRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMNIDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNKVHIVSPSITARGLLN 525
            QILG   L+PVGALSMMILEDGPLF+ADT VH  P P+Q+A+I IGAARHVRRFG++P+IA CS SQFGNQ  GTG + R A+ +LD  GHDF Y+GEMNIDTALDP+LR RI+P  R+ GAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGN+ HIVSPSITARGLLN
Sbjct:  570 QILGNKSLNPVGALSMMILEDGPLFVADTQVHLHPDPRQIADIAIGAARHVRRFGIEPKIAFCSQSQFGNQGEGTGGRLRGAIRLLDEAGHDFCYEGEMNIDTALDPDLRTRILPGNRMEGAANVLVFAHADAASGVRNILKMKGGGLEVGPILMGMGNRAHIVSPSITARGLLN 744
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75940.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NADP-dependent1.250e-9885.14malic enzyme (Fragment) n=1 Tax=Sulfitobacter sp. ... [more]
NADP-dependent3.920e-9180.00malic enzyme n=3 Tax=Roseobacter TaxID=2433 RepID=... [more]
Malate5.510e-9179.43dehydrogenase (Oxaloacetate-decarboxylating)(NADP+... [more]
NADP-dependent4.240e-9081.71malic enzyme n=1 Tax=Ascidiaceihabitans donghaensi... [more]
NADP-dependent4.240e-9079.43malic enzyme n=2 Tax=unclassified Sulfitobacter Ta... [more]
NAD-dependent3.260e-8979.43malic enzyme n=3 Tax=Roseobacter TaxID=2433 RepID=... [more]
NADP-dependent3.520e-8877.71malic enzyme n=9 Tax=Sulfitobacter TaxID=60136 Rep... [more]
NADP-dependent3.780e-8870.86malic enzyme n=1 Tax=Aliiroseovarius sp. TaxID=187... [more]
Phosphate9.750e-8877.71acetyltransferase n=20 Tax=root TaxID=1 RepID=A3SS... [more]
NADP-dependent2.700e-8777.14malic enzyme n=1 Tax=Roseobacter sp. YSTF-M11 TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75940contigH-canaliculatus_M_contigs75940:2..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog391595.RLO149_c004540
Preferred namedme
PFAMsMalic_M,PTA_PTB,malic
Model size525
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00105
KEGG koko:K00029
KEGG ReactionR00216
KEGG Pathwayko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200
KEGG ModuleM00169,M00172
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004470,GO:0004473,GO:0005488,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0030145,GO:0043167,GO:0043169,GO:0046872,GO:0046914,GO:0055114
Exons1
Evalue5.35e-90
EggNOG OGsCOG0280@1|root,COG0281@1|root,COG0280@2|Bacteria,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,2TQJT@28211|Alphaproteobacteria,2P28R@2433|Roseobacter
EC1.1.1.40
DescriptionCOG0281 Malic enzyme
Cds size525
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854097.1163347-CDS-H-canaliculatus_M_contigs75940:1..5261696854097.1163347-CDS-H-canaliculatus_M_contigs75940:1..526Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75940 2..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75940.1.1prot_H-canaliculatus_M_contigs75940.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75940 2..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75940.1.1

>prot_H-canaliculatus_M_contigs75940.1.1 ID=prot_H-canaliculatus_M_contigs75940.1.1|Name=mRNA_H-canaliculatus_M_contigs75940.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=175bp
QILGRGDLHPVGALSMMILEDGPLFIADTHVHTEPTPQQLAEIVIGAARH
VRRFGLDPQIALCSHSQFGNQPTGTGAQARAALEILDAGGHDFTYDGEMN
IDTALDPELRARIMPEGRLNGAANVLVFAHADAASGVRNILKMKGGGLEV
GPILMGMGNKVHIVSPSITARGLLN
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mRNA from alignment at H-canaliculatus_M_contigs75940:2..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75940.1.1 ID=mRNA_H-canaliculatus_M_contigs75940.1.1|Name=mRNA_H-canaliculatus_M_contigs75940.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=525bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75940:2..526- (Hapterophycus canaliculatus Oshoro7m male)
CAAATCCTTGGGCGCGGTGATCTGCACCCGGTGGGCGCGCTGTCGATGAT
GATCCTAGAAGACGGACCACTGTTCATCGCCGACACGCATGTGCACACAG
AACCGACGCCGCAACAGCTTGCTGAAATCGTGATCGGGGCTGCCCGTCAC
GTTCGCCGCTTTGGTCTAGATCCGCAAATCGCCCTGTGTTCGCATTCGCA
ATTTGGCAACCAACCGACGGGCACCGGGGCGCAAGCGCGCGCAGCACTCG
AAATCCTGGACGCAGGTGGCCACGATTTCACGTATGACGGCGAGATGAAC
ATCGACACGGCCCTTGATCCGGAATTGCGCGCCCGCATCATGCCCGAAGG
TCGCCTGAACGGGGCCGCAAATGTGCTGGTCTTTGCCCACGCAGATGCCG
CATCAGGGGTGCGCAACATTCTGAAGATGAAGGGCGGCGGGCTAGAGGTT
GGTCCGATTTTGATGGGCATGGGCAACAAAGTTCACATCGTATCGCCGTC
AATTACCGCGCGCGGCCTGCTGAAT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75940:2..526-

>mRNA_H-canaliculatus_M_contigs75940.1.1 ID=mRNA_H-canaliculatus_M_contigs75940.1.1|Name=mRNA_H-canaliculatus_M_contigs75940.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=525bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75940:2..526- (Hapterophycus canaliculatus Oshoro7m male)
CAAATCCTTGGGCGCGGTGATCTGCACCCGGTGGGCGCGCTGTCGATGAT
GATCCTAGAAGACGGACCACTGTTCATCGCCGACACGCATGTGCACACAG
AACCGACGCCGCAACAGCTTGCTGAAATCGTGATCGGGGCTGCCCGTCAC
GTTCGCCGCTTTGGTCTAGATCCGCAAATCGCCCTGTGTTCGCATTCGCA
ATTTGGCAACCAACCGACGGGCACCGGGGCGCAAGCGCGCGCAGCACTCG
AAATCCTGGACGCAGGTGGCCACGATTTCACGTATGACGGCGAGATGAAC
ATCGACACGGCCCTTGATCCGGAATTGCGCGCCCGCATCATGCCCGAAGG
TCGCCTGAACGGGGCCGCAAATGTGCTGGTCTTTGCCCACGCAGATGCCG
CATCAGGGGTGCGCAACATTCTGAAGATGAAGGGCGGCGGGCTAGAGGTT
GGTCCGATTTTGATGGGCATGGGCAACAAAGTTCACATCGTATCGCCGTC
AATTACCGCGCGCGGCCTGCTGAAT
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