mRNA_H-canaliculatus_M_contigs75937.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75937.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75937.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75937.1.1 vs.
Match: hypothetical (protein n=1 Tax=Cochlodiniinecator piscidefendens TaxID=2715756 RepID=UPI00140837C2)

HSP 1 Score: 73.2 bits (178), Expect = 5.610e-14
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    4 RIFAASVALIFATVTTSAAGSVQSISRPEIAARHCGDAWAKLQRLDPQILANVAHAEIDPQIDPETTEAFNKFGTAVIIMRDYVGTFVAFSSQE 285
            +I   +V L F   T SAA   ++ S P IAA HC   WA+++ L P   A     EI P+IDP TTEA+NKF TA I   DY  +FV F  +E
Sbjct:    5 QILFTAVLLTFVFNTPSAAELPRNASFPAIAAHHCNAEWARIEELTPDAWAAYDLLEIVPEIDPVTTEAYNKFATATIAFGDYTTSFVGFYDEE 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75937.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
hypothetical5.610e-1444.68protein n=1 Tax=Cochlodiniinecator piscidefendens ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75937contigH-canaliculatus_M_contigs75937:16..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size285
Hectar predicted targeting categorysignal peptide
Exons1
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854096.932593-CDS-H-canaliculatus_M_contigs75937:15..3001696854096.932593-CDS-H-canaliculatus_M_contigs75937:15..300Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75937 16..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75937.1.1prot_H-canaliculatus_M_contigs75937.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75937 16..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75937.1.1

>prot_H-canaliculatus_M_contigs75937.1.1 ID=prot_H-canaliculatus_M_contigs75937.1.1|Name=mRNA_H-canaliculatus_M_contigs75937.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=95bp
MRIFAASVALIFATVTTSAAGSVQSISRPEIAARHCGDAWAKLQRLDPQI
LANVAHAEIDPQIDPETTEAFNKFGTAVIIMRDYVGTFVAFSSQE
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mRNA from alignment at H-canaliculatus_M_contigs75937:16..300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75937.1.1 ID=mRNA_H-canaliculatus_M_contigs75937.1.1|Name=mRNA_H-canaliculatus_M_contigs75937.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=285bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75937:16..300- (Hapterophycus canaliculatus Oshoro7m male)
ATGCGTATTTTCGCAGCCTCGGTTGCGCTTATTTTTGCCACGGTCACCAC
GTCAGCGGCGGGTTCGGTTCAATCTATCAGCCGACCAGAGATTGCTGCGC
GGCATTGCGGTGATGCCTGGGCCAAGTTGCAACGTCTGGACCCACAAATT
CTGGCAAATGTCGCCCACGCTGAGATTGATCCACAGATCGATCCCGAAAC
GACCGAGGCGTTCAACAAATTTGGAACCGCGGTCATCATCATGCGGGACT
ATGTCGGGACTTTCGTGGCTTTTAGCAGTCAAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75937:16..300-

>mRNA_H-canaliculatus_M_contigs75937.1.1 ID=mRNA_H-canaliculatus_M_contigs75937.1.1|Name=mRNA_H-canaliculatus_M_contigs75937.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=285bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75937:16..300- (Hapterophycus canaliculatus Oshoro7m male)
ATGCGTATTTTCGCAGCCTCGGTTGCGCTTATTTTTGCCACGGTCACCAC
GTCAGCGGCGGGTTCGGTTCAATCTATCAGCCGACCAGAGATTGCTGCGC
GGCATTGCGGTGATGCCTGGGCCAAGTTGCAACGTCTGGACCCACAAATT
CTGGCAAATGTCGCCCACGCTGAGATTGATCCACAGATCGATCCCGAAAC
GACCGAGGCGTTCAACAAATTTGGAACCGCGGTCATCATCATGCGGGACT
ATGTCGGGACTTTCGTGGCTTTTAGCAGTCAAGAG
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