mRNA_H-canaliculatus_M_contigs75934.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75934.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75934.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Match: Dynein (heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT69_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.990e-25
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 KFTLTADECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 162
            KFTLTA+ECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL
Sbjct: 2309 KFTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 2362
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BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Match: Dynein (heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.830e-14
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    4 FTLTADECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 162
            F L+  E  LV EL  WLVEPCLAF+RRE++EM PTVDTNLV+SLINIMEC L
Sbjct: 1272 FVLSRQERQLVEELCLWLVEPCLAFIRRELTEMSPTVDTNLVRSLINIMECLL 1324
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BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Match: Dynein (heavy chain n=28 Tax=Phytophthora TaxID=4783 RepID=D0MXQ9_PHYIT)

HSP 1 Score: 68.2 bits (165), Expect = 5.040e-12
Identity = 31/53 (58.49%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    4 FTLTADECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 162
            F + +++ +L+  LF+WLVEPC+AF+R+E+ E+ PTVDTNLVQSLI+I+E QL
Sbjct: 2074 FEINSEQRILIYFLFSWLVEPCIAFVRKELVELSPTVDTNLVQSLIHILEAQL 2126
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BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9Y8_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 2.410e-11
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    4 FTLTADECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 162
            F +  D+  L+  LF+WLVEPC+AF+R+E+ E+ PTVDTNLVQSLI+I E QL
Sbjct: 1141 FEINNDQRSLIYFLFSWLVEPCIAFVRKELVELSPTVDTNLVQSLIHIFEAQL 1193
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BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Match: Dynein (heavy chain axonemal n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0L6_PLAHL)

HSP 1 Score: 66.2 bits (160), Expect = 2.410e-11
Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 FTLTADECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 162
            F +  D+  L+  LF+WLVEPC+AF+R+E++E+ PTVD+NLVQSLI+I+E QL
Sbjct: 2020 FEINFDQRKLIFFLFSWLVEPCIAFVRKELTELSPTVDSNLVQSLIHILEAQL 2072
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BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RZ69_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.490e-11
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    4 FTLTADECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 162
            F + +++  L+  LF+WLVEPC+AF+R+E+ E+ PTVDTNLVQSLI+I E QL
Sbjct: 1367 FEINSEQRNLIYFLFSWLVEPCIAFVRKELVELSPTVDTNLVQSLIHIFEAQL 1419
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BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A8K1FD19_PYTOL)

HSP 1 Score: 65.5 bits (158), Expect = 4.500e-11
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    4 FTLTADECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 162
            F +  ++  L+  LF+WLVEPC+AF+R+E+ E+ PTVDTNLVQSLI+I+E QL
Sbjct: 2126 FEINLEQRQLLTFLFSWLVEPCIAFVRKELVELSPTVDTNLVQSLIHILEAQL 2178
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BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMI7_PYTIN)

HSP 1 Score: 65.1 bits (157), Expect = 6.140e-11
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    4 FTLTADECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 162
            + +  D+ +LV  LF+WLVEPCLAF+R+E+ E+ PTVD+NLVQSL+ I E QL
Sbjct: 1848 YDMMIDQRMLVTFLFSWLVEPCLAFVRKELVELSPTVDSNLVQSLLXIFEAQL 1900
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BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A662X5F7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.150e-11
Identity = 29/53 (54.72%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 FTLTADECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 162
            F + +++  L+  LF+WLVEPC++F+R+E+ E+ PTVDTNL+QSLI+I+E QL
Sbjct: 2090 FEINSEQRTLLSFLFSWLVEPCISFVRKELVELSPTVDTNLIQSLIHILEAQL 2142
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BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBA0_GLOUD)

HSP 1 Score: 63.9 bits (154), Expect = 1.570e-10
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   19 DECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 162
            ++  L+  LFAWLVEPC+AF+R+E+ E+ PTVDTNLV SLI+I+E QL
Sbjct:  823 EQRALLSFLFAWLVEPCIAFVRKELVELTPTVDTNLVMSLIHILEAQL 870
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75934.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dynein1.990e-2598.15heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Dynein1.830e-1471.70heavy chain and region D6 of dynein motor-domain-c... [more]
Dynein5.040e-1258.49heavy chain n=28 Tax=Phytophthora TaxID=4783 RepID... [more]
Uncharacterized2.410e-1160.38protein n=1 Tax=Phytophthora ramorum TaxID=164328 ... [more]
Dynein2.410e-1158.49heavy chain axonemal n=1 Tax=Plasmopara halstedii ... [more]
Uncharacterized4.490e-1158.49protein n=1 Tax=Phytophthora kernoviae TaxID=32545... [more]
Uncharacterized4.500e-1158.49protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A8K1F... [more]
Uncharacterized6.140e-1158.49protein n=1 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Uncharacterized6.150e-1154.72protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A... [more]
Uncharacterized1.570e-1062.50protein n=1 Tax=Globisporangium ultimum (strain AT... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75934contigH-canaliculatus_M_contigs75934:10..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FT69
PFAMsAAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,DUF4496,Dynein_heavy,MT
Model size162
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue3.27e-26
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size162
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854096.8851461-CDS-H-canaliculatus_M_contigs75934:9..1111696854096.8851461-CDS-H-canaliculatus_M_contigs75934:9..111Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75934 10..111 +
1696854096.898574-CDS-H-canaliculatus_M_contigs75934:456..5161696854096.898574-CDS-H-canaliculatus_M_contigs75934:456..516Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75934 457..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75934.1.1prot_H-canaliculatus_M_contigs75934.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75934 10..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75934.1.1

>prot_H-canaliculatus_M_contigs75934.1.1 ID=prot_H-canaliculatus_M_contigs75934.1.1|Name=mRNA_H-canaliculatus_M_contigs75934.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=54bp
KFTLTADECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIM
ECQL
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mRNA from alignment at H-canaliculatus_M_contigs75934:10..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75934.1.1 ID=mRNA_H-canaliculatus_M_contigs75934.1.1|Name=mRNA_H-canaliculatus_M_contigs75934.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=507bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75934:10..516+ (Hapterophycus canaliculatus Oshoro7m male)
AAGTTCACGCTGACGGCGGACGAGTGCCTGCTAGTGAGAGAGCTGTTCGC
CTGGCTGGTGGAGCCATGCCTGGCGTTCCTCCGAAGGGAAGTGTCCGAGA
TGGTGAGGGATCGCTGGTGTTGCGGTATCTGAAGATGTTGCTCCTGTCGC
TGGTGGTTCATTAAGGCACCTGCGGCGGGTGTTCGACCCGTGAGCTGACG
GAGAGATTGGAACACGCTGCGCTGATCACCCCACAGAAACGCACCCACGC
TAAATTGCGCGATCCTCGTTTAGCCCGAAAACGCTGACTGGAAGATGATA
AACGCCTTAGCAACCCCCCCTCCTCTTCTTTCAGGAGGTTTTCCCCGAGT
TTTGTGGCGGTATGTAGTAGTGCGTTCTTGCGACCCCGGCATGGACAGCT
GATGATTGAATTCAACCACGCGTCCCGAACTCTCGCCCGTACGCAAGGTT
CCTACGGTGGACACCAATCTTGTGCAGTCCCTCATCAACATCATGGAGTG
CCAGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75934:10..516+

>mRNA_H-canaliculatus_M_contigs75934.1.1 ID=mRNA_H-canaliculatus_M_contigs75934.1.1|Name=mRNA_H-canaliculatus_M_contigs75934.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75934:10..516+ (Hapterophycus canaliculatus Oshoro7m male)
AAGTTCACGCTGACGGCGGACGAGTGCCTGCTAGTGAGAGAGCTGTTCGC
CTGGCTGGTGGAGCCATGCCTGGCGTTCCTCCGAAGGGAAGTGTCCGAGA
TGGTTCCTACGGTGGACACCAATCTTGTGCAGTCCCTCATCAACATCATG
GAGTGCCAGCTG
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