mRNA_H-canaliculatus_M_contigs7593.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7593.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7593.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Match: Dolichol-phosphate (mannosyltransferase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ07_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 5.680e-64
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT 321
            VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMK+VTSKGYVFQMEVIVRA+LKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT
Sbjct:  175 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKEVTSKGYVFQMEVIVRARLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT 281
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Match: Dolichol-phosphate (mannosyltransferase subunit 1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7I2_HYAAE)

HSP 1 Score: 156 bits (395), Expect = 1.670e-44
Identity = 76/107 (71.03%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT 321
            V GWDL RKLTSRVAN+LA  LL+P VTDLTGS+RL+ +  LEDIM+ +   GYVFQME++VRA+ + YS+ EVPITFVDRIYGESKLG+GEIV+YL GL+NLFLTT
Sbjct:  105 VYGWDLRRKLTSRVANYLATVLLNPSVTDLTGSFRLYKRDVLEDIMQSIQGLGYVFQMEILVRARQRQYSIAEVPITFVDRIYGESKLGAGEIVAYLRGLLNLFLTT 211
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Match: Dolichol-phosphate (mannosyltransferase subunit 1 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5DLE1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.750e-43
Identity = 75/107 (70.09%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT 321
            V GW LFRK+TSR ANF+A  LL PGV+DLTGS+RL+++ A+EDI+  V SKGY FQME++VRAK  G +VGEVPITFVDR+YG SKLGSGEIV +L GL+NLFLTT
Sbjct:  118 VYGWSLFRKMTSRGANFMADFLLQPGVSDLTGSFRLYSRNAIEDILPKVNSKGYAFQMEIMVRAKDCGLTVGEVPITFVDRVYGNSKLGSGEIVGFLKGLLNLFLTT 224
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Match: Dolichol-phosphate (mannosyltransferase subunit 1 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CA21_9DINO)

HSP 1 Score: 152 bits (383), Expect = 4.280e-43
Identity = 76/107 (71.03%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT 321
            V GWD  RKLTSRVANFLA TLL+P  +DLTGS+RL+ +A LE IM+ V S+GYVFQMEV+VRA+  G SVGEVPITFVDR+YGESKLG+GEIV YL GL +LF +T
Sbjct:   74 VHGWDFRRKLTSRVANFLAQTLLTPRASDLTGSFRLYKRAVLEKIMEAVISRGYVFQMEVLVRARQLGCSVGEVPITFVDRLYGESKLGAGEIVEYLKGLASLFFST 180
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Match: Dolichol-phosphate (mannosyltransferase subunit 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFF6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 8.390e-43
Identity = 73/107 (68.22%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT 321
            V GWDL RKLTSRVAN+LA  LL+P V+DLTGS+RL+ +A +EDIM  +   GYVFQME++VRA+ + Y++ EVPITFVDRIYGESKLG+GEIV+YL GL+NLF TT
Sbjct:  133 VYGWDLRRKLTSRVANYLATVLLNPSVSDLTGSFRLYKRAVIEDIMSSIQGLGYVFQMEILVRARERRYTIAEVPITFVDRIYGESKLGAGEIVAYLKGLLNLFFTT 239
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Match: Dolichol-phosphate (mannosyltransferase subunit 1 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CIK6_PYTIN)

HSP 1 Score: 152 bits (385), Expect = 1.190e-42
Identity = 74/107 (69.16%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    1 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT 321
            V GWDL RKLTSRVAN+LA  LL+P  +DLTGS+RL+ +  +EDIM  +   GYVFQME++VRA+LK YS+ EVPITFVDRIYGESKLG+GEIV+YL GL  LFLTT
Sbjct:  133 VFGWDLRRKLTSRVANYLATVLLNPHCSDLTGSFRLYKRDVIEDIMSSIQGLGYVFQMEILVRARLKNYSIAEVPITFVDRIYGESKLGAGEIVAYLKGLAQLFLTT 239
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Match: Dolichol-phosphate (mannosyltransferase subunit 1 n=9 Tax=Peronosporaceae TaxID=4777 RepID=W2JPX9_PHYPR)

HSP 1 Score: 152 bits (385), Expect = 1.220e-42
Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT 321
            V GWDL RKLTSRVAN+LA  LL+P VTDLTGS+RL+ +  +EDIM  +   GYVFQME++VRA+ + YS+ EVPITFVDRIYGESKLG+GEIV+YL GL+NLF TT
Sbjct:  134 VYGWDLRRKLTSRVANYLATVLLNPSVTDLTGSFRLYKRDVIEDIMSAIQGLGYVFQMEILVRARQRQYSIDEVPITFVDRIYGESKLGAGEIVAYLKGLLNLFFTT 240
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Match: Dolichol-phosphate (mannosyltransferase subunit 1 n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PNS2_9CHLO)

HSP 1 Score: 152 bits (385), Expect = 1.700e-42
Identity = 73/106 (68.87%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLT 318
            V GWD  RKLTSR AN+LA  LL+PG +DLTGS+RL+TK  LE++++ V SKGYVFQME+IVRAK  G+SVGEVPI+FVDR+YGESKLG+ EIV+YL GL+ LF T
Sbjct:  146 VVGWDTRRKLTSRGANYLAKVLLAPGASDLTGSFRLYTKPVLEELVRAVKSKGYVFQMEIIVRAKAMGFSVGEVPISFVDRVYGESKLGAAEIVAYLKGLIRLFFT 251
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Match: Dolichol-phosphate (mannosyltransferase subunit 1 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8A9_9STRA)

HSP 1 Score: 151 bits (382), Expect = 3.080e-42
Identity = 72/106 (67.92%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLT 318
            VAGWDL RKLTSRVAN+LA  LL+PGV+DLTGS+RL+ +  LEDIM+ + S+GYVFQMEV VRA+  GYS  EVPI+FVDRIYGESKLG+GE++ Y+ GL+ LF +
Sbjct:  130 VAGWDLKRKLTSRVANYLAQVLLNPGVSDLTGSFRLYKRDVLEDIMQHMQSRGYVFQMEVAVRARAMGYSFAEVPISFVDRIYGESKLGAGEVIQYIKGLLTLFFS 235
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Match: Dolichol-phosphate (mannosyltransferase subunit 1 n=16 Tax=Oomycota TaxID=4762 RepID=H3G934_PHYRM)

HSP 1 Score: 151 bits (381), Expect = 4.860e-42
Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 VAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT 321
            V GWDL RKLTSRVAN+LA  LL+P VTDLTGS+RL+ +  +EDIM  +   GYVFQME++VRA+ + +S+ EVPITFVDRIYGESKLG+GEIV+YL GL+NLF TT
Sbjct:  134 VYGWDLRRKLTSRVANYLATVLLNPSVTDLTGSFRLYKRDVIEDIMSVIQGLGYVFQMEILVRARQRQFSIAEVPITFVDRIYGESKLGAGEIVAYLKGLLNLFFTT 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7593.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dolichol-phosphate5.680e-6498.13mannosyltransferase subunit 1 n=1 Tax=Ectocarpus s... [more]
Dolichol-phosphate1.670e-4471.03mannosyltransferase subunit 1 n=1 Tax=Hyaloperonos... [more]
Dolichol-phosphate2.750e-4370.09mannosyltransferase subunit 1 n=2 Tax=Corethron hy... [more]
Dolichol-phosphate4.280e-4371.03mannosyltransferase subunit 1 n=1 Tax=Symbiodinium... [more]
Dolichol-phosphate8.390e-4368.22mannosyltransferase subunit 1 n=1 Tax=Pythium bras... [more]
Dolichol-phosphate1.190e-4269.16mannosyltransferase subunit 1 n=2 Tax=Pythium TaxI... [more]
Dolichol-phosphate1.220e-4269.16mannosyltransferase subunit 1 n=9 Tax=Peronosporac... [more]
Dolichol-phosphate1.700e-4268.87mannosyltransferase subunit 1 n=1 Tax=Ostreococcus... [more]
Dolichol-phosphate3.080e-4267.92mannosyltransferase subunit 1 n=1 Tax=Phaeomonas p... [more]
Dolichol-phosphate4.860e-4268.22mannosyltransferase subunit 1 n=16 Tax=Oomycota Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7593contigH-canaliculatus_M_contigs7593:87..1054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ07
Preferred nameDPM1
PFAMsGlycos_transf_2
Model size641
Max annot lvl2759|Eukaryota
KEGG rclassRC00005
KEGG koko:K00721
KEGG ReactionR01009
KEGG Pathwayko00510,ko01100,map00510,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000030,GO:0003674,GO:0003824,GO:0004169,GO:0004582,GO:0005488,GO:0005537,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006493,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006720,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016093,GO:0016740,GO:0016757,GO:0016758,GO:0019348,GO:0019538,GO:0019637,GO:0019673,GO:0030246,GO:0031501,GO:0031984,GO:0032991,GO:0033185,GO:0034641,GO:0034645,GO:0035268,GO:0035269,GO:0036094,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042221,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0048029,GO:0050896,GO:0055086,GO:0060359,GO:0070085,GO:0071704,GO:0090407,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901698,GO:1902494,GO:1903509,GO:1990234
Exons2
Evalue5.48e-33
EggNOG OGsCOG0463@1|root,KOG2978@2759|Eukaryota
EC2.4.1.83
Descriptiondolichyl-phosphate beta-D-mannosyltransferase activity
Cds size189
COG categoryM
CAZyGT2
BiGG ReactioniRC1080.CRv4_Au5_s3_g10178_t1
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854096.806175-UTR-H-canaliculatus_M_contigs7593:86..2211696854096.806175-UTR-H-canaliculatus_M_contigs7593:86..221Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7593 87..221 +
1696854096.847748-UTR-H-canaliculatus_M_contigs7593:737..10541696854096.847748-UTR-H-canaliculatus_M_contigs7593:737..1054Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7593 738..1054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854096.8216507-CDS-H-canaliculatus_M_contigs7593:221..2431696854096.8216507-CDS-H-canaliculatus_M_contigs7593:221..243Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7593 222..243 +
1696854096.8330774-CDS-H-canaliculatus_M_contigs7593:570..7371696854096.8330774-CDS-H-canaliculatus_M_contigs7593:570..737Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7593 571..737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7593.1.1prot_H-canaliculatus_M_contigs7593.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7593 222..737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7593.1.1

>prot_H-canaliculatus_M_contigs7593.1.1 ID=prot_H-canaliculatus_M_contigs7593.1.1|Name=mRNA_H-canaliculatus_M_contigs7593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=63bp
MKDVTSKGYVFQMEVIVRAKLKGYSVGEVPITFVDRIYGESKLGSGEIVS
YLIGLVNLFLTT*
back to top

mRNA from alignment at H-canaliculatus_M_contigs7593:87..1054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7593.1.1 ID=mRNA_H-canaliculatus_M_contigs7593.1.1|Name=mRNA_H-canaliculatus_M_contigs7593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=968bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7593:87..1054+ (Hapterophycus canaliculatus Oshoro7m male)
GTGGCAGGGTGGGATTTGTTCCGAAAACTTACCAGTCGCGTGGCGAACTT
CTTGGCGCACACGCTGCTCTCGCCCGGCGTGACGGATCTAACGGGCTCGT
ATAGACTCTTCACCAAGGCAGCTCTGGAGGATATCATGAAGGACGTCACC
AGCAAAGGTGCGCGTGGAGTTAAGCCTGCGAATGACTTCCACGAATTGTT
TCAGGTCAACACAGAGTTCGGCTGTCTCTCTGCAGGTATTCAGAACGTTC
AGACCTAGATACCGGTTATCTAGATACCTCGCACACTTAGCTAGCTTCAC
CCGCCCGCACCCGAGGACCTTTTGGAAAGGGTGCGACTTGAAATCGAGAC
GTAGTCTCGTCTAAGAAGGCAATGAGAGTCACTCAAAAAAAGAGCAAGAG
CGCTGCCGTGACCTGAACCTGCGATTTGGCCGGGTTGAGAATCGCAGCGA
TAACCACATGTTCGTCGCGTTTTGGCTGACGCAGGGTACGTTTTCCAGAT
GGAGGTGATCGTCCGGGCAAAGCTGAAGGGCTACAGCGTGGGGGAGGTGC
CCATCACCTTCGTCGACAGAATCTACGGAGAATCGAAGCTCGGGTCGGGG
GAGATCGTGTCCTACTTGATCGGCCTCGTTAATCTGTTCCTTACCACATG
AGCGGCCATTTCCCGTTGTATGTTTAGATTATAAAGAAGAATGGTGAACG
GTATCTCGTGGAAGATGCCCCAGCTGGTGACTATGACTGCCCGTTGTGTA
ATGTTCTGCGTGCACAGGGTACGCCGGTTTTGTTTGTAACAGCCACGATT
ATCACAGGCGTGGGCGGTTGCTGCTGGAGTTCGCGCCTGTAATGGCATTA
TATAAGTACGTTTCCGTCGTTGATTTTGTGTGTTCTTTCATGTGTATTTA
CTGTAGTTGTGTGACGGGTACAAAAGTTTCGCTCGAAAGTGAGTTTGTGT
TTTTTTTCAAAGAAAAAT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7593:87..1054+

>mRNA_H-canaliculatus_M_contigs7593.1.1 ID=mRNA_H-canaliculatus_M_contigs7593.1.1|Name=mRNA_H-canaliculatus_M_contigs7593.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=189bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7593:87..1054+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGGACGTCACCAGCAAAGGGTACGTTTTCCAGATGGAGGTGATCGT
CCGGGCAAAGCTGAAGGGCTACAGCGTGGGGGAGGTGCCCATCACCTTCG
TCGACAGAATCTACGGAGAATCGAAGCTCGGGTCGGGGGAGATCGTGTCC
TACTTGATCGGCCTCGTTAATCTGTTCCTTACCACATGA
back to top