mRNA_H-canaliculatus_M_contigs75922.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75922.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75922.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75922.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B1_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 9.110e-48
Identity = 88/115 (76.52%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:   19 APAHGRVREGSAAQEVKEEPEDTLCPRPHEIEMVDVLRRHGVSTPDAVQSLRQSANRVDVALQYAMDMANTRHENRQLDMARLESEKEKDRAAEVQRLKDKTLMVLGEVIPHFPQ 363
            A    RVREG +AQEVKEEPED L PRP E+ MVD+LRRHGV+TPDAV  LRQS NRVDVAL+YAM+M NTRHENRQ DMAR+ESEKEKDRAAE Q+ +DK LMVLGEVIPHFP+
Sbjct:   86 ASPRARVREGPSAQEVKEEPEDPLRPRPEEVGMVDMLRRHGVNTPDAVHCLRQSGNRVDVALRYAMEMKNTRHENRQTDMARVESEKEKDRAAEQQQEEDKILMVLGEVIPHFPK 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75922.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.110e-4876.52protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75922contigH-canaliculatus_M_contigs75922:143..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size363
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001200.1
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854096.690826-CDS-H-canaliculatus_M_contigs75922:142..5051696854096.690826-CDS-H-canaliculatus_M_contigs75922:142..505Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75922 143..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75922.1.1prot_H-canaliculatus_M_contigs75922.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75922 143..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75922.1.1

>prot_H-canaliculatus_M_contigs75922.1.1 ID=prot_H-canaliculatus_M_contigs75922.1.1|Name=mRNA_H-canaliculatus_M_contigs75922.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=121bp
MTINSTAPAHGRVREGSAAQEVKEEPEDTLCPRPHEIEMVDVLRRHGVST
PDAVQSLRQSANRVDVALQYAMDMANTRHENRQLDMARLESEKEKDRAAE
VQRLKDKTLMVLGEVIPHFPQ
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mRNA from alignment at H-canaliculatus_M_contigs75922:143..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75922.1.1 ID=mRNA_H-canaliculatus_M_contigs75922.1.1|Name=mRNA_H-canaliculatus_M_contigs75922.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=363bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75922:143..505+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACCATCAATTCTACAGCCCCAGCTCACGGCCGGGTCCGTGAGGGTTC
AGCAGCGCAAGAGGTCAAAGAGGAACCGGAAGACACTCTCTGCCCAAGAC
CACATGAAATCGAGATGGTAGATGTCCTTCGCCGACATGGTGTATCCACA
CCTGACGCTGTACAAAGTCTACGTCAAAGTGCCAACAGGGTGGATGTTGC
CCTGCAGTATGCAATGGACATGGCTAATACTCGTCACGAAAACCGACAGC
TGGACATGGCTCGCCTGGAGTCTGAAAAGGAGAAGGATAGGGCCGCGGAA
GTGCAGCGACTCAAAGACAAGACCCTCATGGTGCTTGGCGAAGTGATACC
GCATTTCCCACAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75922:143..505+

>mRNA_H-canaliculatus_M_contigs75922.1.1 ID=mRNA_H-canaliculatus_M_contigs75922.1.1|Name=mRNA_H-canaliculatus_M_contigs75922.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=363bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75922:143..505+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACCATCAATTCTACAGCCCCAGCTCACGGCCGGGTCCGTGAGGGTTC
AGCAGCGCAAGAGGTCAAAGAGGAACCGGAAGACACTCTCTGCCCAAGAC
CACATGAAATCGAGATGGTAGATGTCCTTCGCCGACATGGTGTATCCACA
CCTGACGCTGTACAAAGTCTACGTCAAAGTGCCAACAGGGTGGATGTTGC
CCTGCAGTATGCAATGGACATGGCTAATACTCGTCACGAAAACCGACAGC
TGGACATGGCTCGCCTGGAGTCTGAAAAGGAGAAGGATAGGGCCGCGGAA
GTGCAGCGACTCAAAGACAAGACCCTCATGGTGCTTGGCGAAGTGATACC
GCATTTCCCACAG
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