mRNA_H-canaliculatus_M_contigs75871.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75871.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75871.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD62_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.760e-20
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSG 129
            + R++KVWGLGAPTPHFSLEGHERGVN+IDYYPGGDRPYLLSG
Sbjct:  196 LDRSLKVWGLGAPTPHFSLEGHERGVNAIDYYPGGDRPYLLSG 238
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BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNK8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.540e-20
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSG 129
            + RT+KVWGLGA TPHFSLEGH+RGVN +DYYPGGD+PYLLSG
Sbjct:  173 LDRTIKVWGLGAATPHFSLEGHDRGVNCVDYYPGGDKPYLLSG 215
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BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DQ04_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.420e-19
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSG 129
            + RT+KVWGLGA TPHFSLEGH+RGVN +DYYPGGD+PYLLSG
Sbjct:   75 LDRTIKVWGLGAATPHFSLEGHDRGVNCVDYYPGGDKPYLLSG 117
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BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR98_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.570e-18
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSG 129
            + R++KVWGLGA  PHFSLEGHERGVN IDYYPGGD+PYLLSG
Sbjct:  182 LDRSIKVWGLGAAVPHFSLEGHERGVNCIDYYPGGDKPYLLSG 224
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BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Match: Coatomer_WDAD (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3N3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.790e-18
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSG 129
            + RT+KVWGLG+  PHFSLEGHE+GVN+IDYYPGGD+PYLLSG
Sbjct:  163 LDRTIKVWGLGSHMPHFSLEGHEKGVNAIDYYPGGDKPYLLSG 205
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BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIQ5_PYTOL)

HSP 1 Score: 84.7 bits (208), Expect = 4.790e-18
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSGT 132
            + RT+KVWGLG+  PHFSLEGHERGVN IDYYPGGD+PYL+SG+
Sbjct:  163 LDRTIKVWGLGSAHPHFSLEGHERGVNCIDYYPGGDKPYLISGS 206
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BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YT62_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.660e-18
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSGT 132
            + RTV+VWGLG+  PHF+LEGHERGVN IDYYPGGD+PYL+SG+
Sbjct:  163 LDRTVRVWGLGSSHPHFTLEGHERGVNCIDYYPGGDKPYLISGS 206
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BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Match: Coatomer (subunit beta' n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W723_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.950e-18
Identity = 32/43 (74.42%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSG 129
            + R++KVWGLG+PTPH++LEGHERGVN IDYYP GD+PY+LSG
Sbjct:  163 LDRSIKVWGLGSPTPHYTLEGHERGVNCIDYYPSGDKPYILSG 205
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BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Match: Coatomer (subunit beta' n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMY1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.950e-18
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSG 129
            + RT+KVWGLGA  PHFSLEGH+RGVN +DYYPGGD+PYL+SG
Sbjct:  163 LDRTIKVWGLGAQQPHFSLEGHDRGVNCLDYYPGGDKPYLISG 205
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BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W6N4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.140e-17
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSG 129
            + R++KVWGLG+  PH++LEGHERGVN +DYYP GD+PY+LSG
Sbjct:    9 LDRSIKVWGLGSAVPHYTLEGHERGVNCVDYYPSGDKPYILSG 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75871.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.760e-2088.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical4.540e-2081.40protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Hypothetical5.420e-1981.40protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
Hypothetical2.570e-1881.40protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Coatomer_WDAD4.790e-1879.07domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Uncharacterized4.790e-1877.27protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Uncharacterized8.660e-1875.00protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1... [more]
Coatomer8.950e-1874.42subunit beta' n=2 Tax=Eucampia antarctica TaxID=49... [more]
Coatomer8.950e-1876.74subunit beta' n=4 Tax=Pelagomonas calceolata TaxID... [more]
Hypothetical1.140e-1767.44protein (Fragment) n=1 Tax=Ditylum brightwellii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75871contigH-canaliculatus_M_contigs75871:17..148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009041059.1
PFAMsCoatomer_WDAD,WD40
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K17302
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
Exons1
Evalue2e-18
EggNOG OGsKOG0276@1|root,KOG0276@2759|Eukaryota
DescriptionThe coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Cds size132
COG categoryU
BRITEko00000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854096.190085-CDS-H-canaliculatus_M_contigs75871:16..1481696854096.190085-CDS-H-canaliculatus_M_contigs75871:16..148Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75871 17..148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75871.1.1prot_H-canaliculatus_M_contigs75871.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75871 17..148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75871.1.1

>prot_H-canaliculatus_M_contigs75871.1.1 ID=prot_H-canaliculatus_M_contigs75871.1.1|Name=mRNA_H-canaliculatus_M_contigs75871.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=44bp
IKRTVKVWGLGAPTPHFSLEGHERGVNSIDYYPGGDRPYLLSGT
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mRNA from alignment at H-canaliculatus_M_contigs75871:17..148-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75871.1.1 ID=mRNA_H-canaliculatus_M_contigs75871.1.1|Name=mRNA_H-canaliculatus_M_contigs75871.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75871:17..148- (Hapterophycus canaliculatus Oshoro7m male)
ATCAAAAGGACCGTCAAAGTGTGGGGCTTGGGAGCACCCACGCCCCACTT
CTCGCTGGAGGGGCACGAGAGGGGCGTCAACTCCATCGACTACTACCCCG
GCGGGGACCGCCCGTACTTGCTCTCAGGTACG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75871:17..148-

>mRNA_H-canaliculatus_M_contigs75871.1.1 ID=mRNA_H-canaliculatus_M_contigs75871.1.1|Name=mRNA_H-canaliculatus_M_contigs75871.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75871:17..148- (Hapterophycus canaliculatus Oshoro7m male)
ATCAAAAGGACCGTCAAAGTGTGGGGCTTGGGAGCACCCACGCCCCACTT
CTCGCTGGAGGGGCACGAGAGGGGCGTCAACTCCATCGACTACTACCCCG
GCGGGGACCGCCCGTACTTGCTCTCAGGTACG
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