mRNA_H-canaliculatus_M_contigs75858.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75858.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75858.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Match: 5-aminolevulinate (synthase n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F4W3_9RHOB)

HSP 1 Score: 268 bits (686), Expect = 5.780e-87
Identity = 134/149 (89.93%), Postives = 141/149 (94.63%), Query Frame = 1
Query:    1 AASEKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKILKLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAELT 447
            AAS KMCDAIRSYAPGFIFTTSLPPAVAAGAAASV+HLKTAQ LRD QQ QAKILKLRLKGLGLPIIDHG+HIVPVMVGNPVHT++LSD LLE+HGIYVQPINFPTVPRGTERLRFTPSPVHG  E++ALVKAMD LWSHCALNRAELT
Sbjct:  258 AASAKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVKHLKTAQELRDSQQLQAKILKLRLKGLGLPIIDHGSHIVPVMVGNPVHTKLLSDMLLEEHGIYVQPINFPTVPRGTERLRFTPSPVHGPLEIEALVKAMDALWSHCALNRAELT 406          
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Match: 5-aminolevulinate (synthase n=1 Tax=Shimia abyssi TaxID=1662395 RepID=A0A2P8FFI9_9RHOB)

HSP 1 Score: 264 bits (675), Expect = 2.650e-85
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 1
Query:    1 AASEKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKILKLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAEL 444
            AASEKMCDA+RSYAPGFIFTTSLPPAVAAGAAASV HLKT Q LRD QQ QAK+LKLRLKG+GLPIIDHGTHIVPV+VGNPVHT++LSD LL+DHGIYVQPINFPTVPRGTERLRFTPSPVHG GE+D LV AMD LWSHCALNRAEL
Sbjct:  258 AASEKMCDAVRSYAPGFIFTTSLPPAVAAGAAASVAHLKTDQSLRDRQQEQAKVLKLRLKGMGLPIIDHGTHIVPVIVGNPVHTKVLSDMLLDDHGIYVQPINFPTVPRGTERLRFTPSPVHGPGEMDKLVCAMDVLWSHCALNRAEL 405          
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Match: 5-aminolevulinate (synthase n=2 Tax=Actibacterium TaxID=1433986 RepID=A0A058ZP79_9RHOB)

HSP 1 Score: 263 bits (671), Expect = 1.070e-84
Identity = 130/150 (86.67%), Postives = 141/150 (94.00%), Query Frame = 1
Query:    1 AASEKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKILKLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAELTA 450
            AASEKMCDA+RSYAPGFIFTTSLPPAVAAGAAASV+HLKT Q LR++ QTQAKILKLRLKG+GLPIIDHG+HIVPVMVG+PVHT+ LSD LLE +GIYVQPINFPTVPRGTERLRFTPSPVHG  E+D LVKAMDDLWSHCALNRAEL+A
Sbjct:  258 AASEKMCDAVRSYAPGFIFTTSLPPAVAAGAAASVKHLKTDQALREQHQTQAKILKLRLKGMGLPIIDHGSHIVPVMVGDPVHTKKLSDMLLEGYGIYVQPINFPTVPRGTERLRFTPSPVHGPKEMDTLVKAMDDLWSHCALNRAELSA 407          
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Match: 5-aminolevulinate (synthase n=1 Tax=Cognatishimia activa TaxID=1715691 RepID=UPI001ADEC5C2)

HSP 1 Score: 263 bits (671), Expect = 1.070e-84
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 1
Query:    1 AASEKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKILKLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAEL 444
            AAS KMCDA+RSYAPGFIFTTSLPP VAAGAAASV HLK  Q LRD  Q  AK+LKLRLKGLGLPIIDHGTHIVPVMVGNPVHT++LSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHG GE++ALV AMD+LWSHCALNRAEL
Sbjct:  258 AASAKMCDAVRSYAPGFIFTTSLPPVVAAGAAASVAHLKQDQDLRDRHQAAAKVLKLRLKGLGLPIIDHGTHIVPVMVGNPVHTKVLSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGPGEINALVHAMDELWSHCALNRAEL 405          
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Match: 5-aminolevulinate (synthase n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A4P6MI64_9RHOB)

HSP 1 Score: 262 bits (670), Expect = 1.510e-84
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 1
Query:    1 AASEKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKILKLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAELTA 450
            AAS KMCDAIRSYAPGFIFTTSLPPAVAAGAAASV HLK AQ LRDE QTQA+ILK+RLKGLGLPIIDHG+HIVPVMVG+PVHT++LSD LL D GIYVQPINFPTVPRGTERLRFTPSPVHG  E+DALV+AMD LWSHCALNRAELTA
Sbjct:  258 AASHKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVAHLKKAQDLRDEHQTQARILKMRLKGLGLPIIDHGSHIVPVMVGDPVHTKMLSDMLLNDFGIYVQPINFPTVPRGTERLRFTPSPVHGPDEIDALVRAMDALWSHCALNRAELTA 407          
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Match: 5-aminolevulinate (synthase n=2 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A849FJC6_9RHOB)

HSP 1 Score: 261 bits (667), Expect = 4.280e-84
Identity = 129/150 (86.00%), Postives = 140/150 (93.33%), Query Frame = 1
Query:    1 AASEKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKILKLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAELTA 450
            A+S KMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKT Q  RDE QTQA+ILK+RLKGLGLP+IDHG+HIVPV+VG+PVHT+ LSD LLED GIYVQPINFPTVPRGTERLRFTPSPVHG GE+DALV+AMD LWSHCALNRAEL+A
Sbjct:  258 ASSAKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTDQERRDEHQTQARILKMRLKGLGLPLIDHGSHIVPVIVGDPVHTKQLSDMLLEDFGIYVQPINFPTVPRGTERLRFTPSPVHGPGEIDALVRAMDQLWSHCALNRAELSA 407          
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Match: 5-aminolevulinate (synthase (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8ZHV7_9ZZZZ)

HSP 1 Score: 253 bits (647), Expect = 2.400e-83
Identity = 126/147 (85.71%), Postives = 134/147 (91.16%), Query Frame = 1
Query:    1 AASEKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKILKLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAE 441
            AAS KMCDAIRSYAPGFIFTTSLPPAVAAGAAASV +LK A  LR++ Q QAK LKLRLKGLGLPIIDHG+HIVPVMVGNPVHT++LSD LLEDHGIYVQPINFPTVPRGTERLRFTPSPVHG  E+DALV+ MD LWSHCALNRAE
Sbjct:   89 AASAKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVAYLKRAPELREKHQQQAKALKLRLKGLGLPIIDHGSHIVPVMVGNPVHTKLLSDMLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGPKEMDALVRGMDTLWSHCALNRAE 235          
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Match: 5-aminolevulinate (synthase n=9 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0P1ER66_9RHOB)

HSP 1 Score: 259 bits (662), Expect = 2.440e-83
Identity = 128/148 (86.49%), Postives = 139/148 (93.92%), Query Frame = 1
Query:    1 AASEKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKILKLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAEL 444
            AASEKMCDA+RSYAPGFIFTTSLPPAVAAGAAASV HLKT Q LR+  QTQA+ILKLRLKGLGLPIIDHG+HIVPV+VGNPVHT++LSD LLED+GIYVQPINFPTVPRGTERLRFTPSPVHG  E+DALVKA+D LWSHCALNRA+L
Sbjct:  258 AASEKMCDAVRSYAPGFIFTTSLPPAVAAGAAASVAHLKTDQALRERHQTQAQILKLRLKGLGLPIIDHGSHIVPVIVGNPVHTKVLSDHLLEDYGIYVQPINFPTVPRGTERLRFTPSPVHGPREMDALVKAIDALWSHCALNRADL 405          
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Match: Aminotransferase (class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Boseongicola sp. TaxID=1886600 RepID=A0A7Y2TUT9_9RHOB)

HSP 1 Score: 251 bits (642), Expect = 2.790e-83
Identity = 125/150 (83.33%), Postives = 138/150 (92.00%), Query Frame = 1
Query:    1 AASEKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKILKLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAELTA 450
            AASEKMCDA+RSYAPGFIFTTSLPPAVAAGAAAS+R LKT Q  R++ QTQA ILKLRLKGLGLPIIDHG+HIVPV+VG+PVHT+ILSD LL+  GIYVQPINFPTVPRGTERLRFTPSPVHG  E+DA+V AMD+LWSHCALNRAEL+A
Sbjct:   41 AASEKMCDAVRSYAPGFIFTTSLPPAVAAGAAASIRILKTDQTRREQHQTQASILKLRLKGLGLPIIDHGSHIVPVIVGDPVHTKILSDMLLDKFGIYVQPINFPTVPRGTERLRFTPSPVHGPREMDAVVNAMDELWSHCALNRAELSA 190          
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Match: 5-aminolevulinate (synthase n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A0A0ECV9_9RHOB)

HSP 1 Score: 259 bits (661), Expect = 3.450e-83
Identity = 126/148 (85.14%), Postives = 138/148 (93.24%), Query Frame = 1
Query:    1 AASEKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKILKLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFPTVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAEL 444
            AAS+KMCDAIRSYAPGFIFTTSLPPAVAAGAAASV+HLK+ Q LRD+ QTQAKILK RLKGLG+P+IDHG+HIVPV+VGNPVHT++LSD LL+DHGIYVQPINFPTVPRGTERLRFTPSPVHG  E+D LVKAMD LWSHCALNR EL
Sbjct:  258 AASDKMCDAIRSYAPGFIFTTSLPPAVAAGAAASVKHLKSDQALRDQHQTQAKILKTRLKGLGMPLIDHGSHIVPVIVGNPVHTKMLSDMLLDDHGIYVQPINFPTVPRGTERLRFTPSPVHGPDEIDKLVKAMDSLWSHCALNRQEL 405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75858.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
5-aminolevulinate5.780e-8789.93synthase n=1 Tax=Sulfitobacter sp. TaxID=1903071 R... [more]
5-aminolevulinate2.650e-8587.84synthase n=1 Tax=Shimia abyssi TaxID=1662395 RepID... [more]
5-aminolevulinate1.070e-8486.67synthase n=2 Tax=Actibacterium TaxID=1433986 RepID... [more]
5-aminolevulinate1.070e-8487.16synthase n=1 Tax=Cognatishimia activa TaxID=171569... [more]
5-aminolevulinate1.510e-8487.33synthase n=2 Tax=Roseobacteraceae TaxID=2854170 Re... [more]
5-aminolevulinate4.280e-8486.00synthase n=2 Tax=Rhodobacteraceae bacterium TaxID=... [more]
5-aminolevulinate2.400e-8385.71synthase (Fragment) n=1 Tax=marine sediment metage... [more]
5-aminolevulinate2.440e-8386.49synthase n=9 Tax=Roseobacteraceae TaxID=2854170 Re... [more]
Aminotransferase2.790e-8383.33class I/II-fold pyridoxal phosphate-dependent enzy... [more]
5-aminolevulinate3.450e-8385.14synthase n=4 Tax=Rhodobacterales TaxID=204455 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75858contigH-canaliculatus_M_contigs75858:80..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1461693.ATO10_01340
Preferred namehemA
PFAMsAminotran_1_2
Model size453
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00004,RC02815
KEGG koko:K00643
KEGG ReactionR00830
KEGG Pathwayko00260,ko00860,ko01100,ko01110,map00260,map00860,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.49e-82
EggNOG OGsCOG0156@1|root,COG0156@2|Bacteria,1MVVH@1224|Proteobacteria,2TQXI@28211|Alphaproteobacteria
EC2.3.1.37
Description5-aminolevulinic acid synthase
Cds size438
COG categoryE
BRITEko00000,ko00001,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.8943484-CDS-H-canaliculatus_M_contigs75858:79..5171696854095.8943484-CDS-H-canaliculatus_M_contigs75858:79..517Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75858 80..517 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.9060457-UTR-H-canaliculatus_M_contigs75858:517..5321696854095.9060457-UTR-H-canaliculatus_M_contigs75858:517..532Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75858 518..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75858.1.1prot_H-canaliculatus_M_contigs75858.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75858 80..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75858.1.1

>prot_H-canaliculatus_M_contigs75858.1.1 ID=prot_H-canaliculatus_M_contigs75858.1.1|Name=mRNA_H-canaliculatus_M_contigs75858.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=146bp
MCDAIRSYAPGFIFTTSLPPAVAAGAAASVRHLKTAQHLRDEQQTQAKIL
KLRLKGLGLPIIDHGTHIVPVMVGNPVHTQILSDKLLEDHGIYVQPINFP
TVPRGTERLRFTPSPVHGSGELDALVKAMDDLWSHCALNRAELTA*
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mRNA from alignment at H-canaliculatus_M_contigs75858:80..532-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75858.1.1 ID=mRNA_H-canaliculatus_M_contigs75858.1.1|Name=mRNA_H-canaliculatus_M_contigs75858.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=453bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75858:80..532- (Hapterophycus canaliculatus Oshoro7m male)
GCAGCCTCTGAAAAGATGTGCGATGCAATCCGGTCCTACGCGCCGGGCTT TATTTTCACGACGTCCTTGCCACCCGCAGTGGCGGCGGGTGCTGCGGCAT CGGTTCGGCATCTGAAAACCGCGCAGCATTTGCGCGACGAGCAACAAACA CAGGCGAAAATCCTGAAACTGCGCCTCAAGGGGCTTGGTCTGCCGATCAT CGATCACGGCACGCACATCGTTCCGGTGATGGTTGGCAACCCGGTTCACA CCCAAATTCTCAGCGATAAGTTGCTTGAGGATCACGGTATTTACGTCCAG CCGATCAACTTTCCCACAGTGCCACGCGGGACAGAGCGTTTGCGGTTCAC GCCGTCGCCGGTTCATGGATCTGGCGAATTGGATGCACTGGTGAAAGCAA TGGACGATTTGTGGTCTCATTGTGCGCTGAATCGTGCCGAATTAACCGCT TAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75858:80..532-

>mRNA_H-canaliculatus_M_contigs75858.1.1 ID=mRNA_H-canaliculatus_M_contigs75858.1.1|Name=mRNA_H-canaliculatus_M_contigs75858.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75858:80..532- (Hapterophycus canaliculatus Oshoro7m male)
ATGTGCGATGCAATCCGGTCCTACGCGCCGGGCTTTATTTTCACGACGTC
CTTGCCACCCGCAGTGGCGGCGGGTGCTGCGGCATCGGTTCGGCATCTGA
AAACCGCGCAGCATTTGCGCGACGAGCAACAAACACAGGCGAAAATCCTG
AAACTGCGCCTCAAGGGGCTTGGTCTGCCGATCATCGATCACGGCACGCA
CATCGTTCCGGTGATGGTTGGCAACCCGGTTCACACCCAAATTCTCAGCG
ATAAGTTGCTTGAGGATCACGGTATTTACGTCCAGCCGATCAACTTTCCC
ACAGTGCCACGCGGGACAGAGCGTTTGCGGTTCACGCCGTCGCCGGTTCA
TGGATCTGGCGAATTGGATGCACTGGTGAAAGCAATGGACGATTTGTGGT
CTCATTGTGCGCTGAATCGTGCCGAATTAACCGCTTAG
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