mRNA_H-canaliculatus_M_contigs7585.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7585.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7585.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7585.2.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM2_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.310e-28
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:   13 FYRKLARRQENILFGRVDASSHPELARHLGLQAVPAFVTFREGEVVTSTATSSKKKIEKLVDELL 207
            FYRKLARRQE +LFGRVDAS+HPELAR LGL AVP+FVTFREGEVVTS ATSSKK IEKLV+ELL
Sbjct:  192 FYRKLARRQEQVLFGRVDASTHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEKLVEELL 256
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BLAST of mRNA_H-canaliculatus_M_contigs7585.2.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU97_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.410e-27
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:   13 FYRKLARRQENILFGRVDASSHPELARHLGLQAVPAFVTFREGEVVTSTATSSKKKIEKLVDELL 207
            FYRKLARRQE +LFGRVDASSHPELAR LGL AVP+FVTFREGEVVTS ATSSKK IEKLV+ELL
Sbjct:  439 FYRKLARRQEQVLFGRVDASSHPELARQLGLTAVPSFVTFREGEVVTSKATSSKKNIEKLVEELL 503
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7585.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Thioredoxin3.310e-2886.15domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Thioredoxin3.410e-2787.69domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7585contigH-canaliculatus_M_contigs7585:4147..4365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LU97
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue5.59e-28
EggNOG OGsCOG0604@1|root,KOG1198@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin domain
Ec32 orthologEc-14_004200.1
Descriptionoxidoreductase activity
Cds size219
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.8121634-CDS-H-canaliculatus_M_contigs7585:4146..43651696854095.8121634-CDS-H-canaliculatus_M_contigs7585:4146..4365Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7585 4147..4365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7585.2.1prot_H-canaliculatus_M_contigs7585.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7585 4147..4365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7585.2.1

>prot_H-canaliculatus_M_contigs7585.2.1 ID=prot_H-canaliculatus_M_contigs7585.2.1|Name=mRNA_H-canaliculatus_M_contigs7585.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=73bp
LLGRFYRKLARRQENILFGRVDASSHPELARHLGLQAVPAFVTFREGEVV
TSTATSSKKKIEKLVDELLLPY*
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mRNA from alignment at H-canaliculatus_M_contigs7585:4147..4365-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7585.2.1 ID=mRNA_H-canaliculatus_M_contigs7585.2.1|Name=mRNA_H-canaliculatus_M_contigs7585.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=219bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7585:4147..4365- (Hapterophycus canaliculatus Oshoro7m male)
CTGCTGGGCAGGTTTTACCGTAAGCTGGCGAGAAGACAGGAGAATATCTT
GTTCGGGCGCGTTGACGCCTCCTCCCACCCCGAGCTGGCGAGACACCTCG
GACTGCAGGCCGTCCCTGCCTTCGTGACGTTCAGGGAAGGCGAGGTGGTG
ACTAGCACGGCAACGAGCAGCAAGAAGAAGATCGAGAAACTCGTGGACGA
GCTGCTGCTGCCCTACTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7585:4147..4365-

>mRNA_H-canaliculatus_M_contigs7585.2.1 ID=mRNA_H-canaliculatus_M_contigs7585.2.1|Name=mRNA_H-canaliculatus_M_contigs7585.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=219bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7585:4147..4365- (Hapterophycus canaliculatus Oshoro7m male)
CTGCTGGGCAGGTTTTACCGTAAGCTGGCGAGAAGACAGGAGAATATCTT
GTTCGGGCGCGTTGACGCCTCCTCCCACCCCGAGCTGGCGAGACACCTCG
GACTGCAGGCCGTCCCTGCCTTCGTGACGTTCAGGGAAGGCGAGGTGGTG
ACTAGCACGGCAACGAGCAGCAAGAAGAAGATCGAGAAACTCGTGGACGA
GCTGCTGCTGCCCTACTAG
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