mRNA_H-canaliculatus_M_contigs75844.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75844.2.1
Unique NamemRNA_H-canaliculatus_M_contigs75844.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75844.2.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9XU83_9DELT)

HSP 1 Score: 96.7 bits (239), Expect = 4.420e-21
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:    7 ARSWSGETLITADAKLEGNELQLHRLYLGEET-IDGFGDPVTVVDWMMRSHAMEERLPLPVDEEAAEFLNSVPLIAMSVFGHRLFCAGVGYSMPPPDGLLHSDGEVAAAVYGNDVNAIRRL 366
            ARSW+GE    A+A+ EG+EL L  + + +    D FGDPV   DW++RSHA+++ LPLP D + A  L + PL     FGH   CA + +  P     L SDG +  AV   D+  +R L
Sbjct:  131 ARSWTGEVQAVAEARREGDELVLDVVRISKAAGFDVFGDPVETFDWLIRSHALDQVLPLPADADGAALLEAAPLTVFGPFGHMAKCAALSWDPPSSIRPLRSDGALVLAVRDADLERVREL 251
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BLAST of mRNA_H-canaliculatus_M_contigs75844.2.1 vs.
Match: ankyrin (repeat domain-containing protein n=1 Tax=Hyalangium sp. H56D21 TaxID=2861190 RepID=UPI001CCD2D7A)

HSP 1 Score: 94.7 bits (234), Expect = 1.590e-20
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:    1 VFARSWSGETLITADAKLEGNELQLHRLYLGEETIDGFGDPVTVVDWMMRSHAMEERLPLPVDEEAAEFLNSVPLIAMSVFGHRLFCAGVGYSMPPPDGLLHSDGEVAAAVYGNDVNAI 357
            + ARSW+GE    A+A+ EG  L++ RL+L E ++   G+P    +W++R HA+ E+LP PVDE+ A  L  +PL A S FG  +FCA   ++ P     L SDG +  A    D+ A+
Sbjct:  102 IAARSWTGEVEAVAEARHEGASLRVERLHLVESSMLRLGEPSQTFEWLIRCHALGEKLPFPVDEQGASVLQDMPLQAFSGFGKVIFCAARTWAPPAATRPLRSDGRLIRAAQRGDLAAL 220
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BLAST of mRNA_H-canaliculatus_M_contigs75844.2.1 vs.
Match: Ankyrin (repeat domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W1A1D0_9DELT)

HSP 1 Score: 77.4 bits (189), Expect = 3.440e-14
Identity = 40/122 (32.79%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    1 VFARSWSGETLITADAKLEGNELQLHRLYLGEETIDG-FGDPVTVVDWMMRSHAMEERLPLPVDEEAAEFLNSVPLIAMSVFGHRLFCAGVGYSMPPPDGLLHSDGEVAAAVYGNDVNAIRR 363
            + ARSW+G     ADA+++G  L + R+   E+++   +G      +W++RSHA+ ++LP P  E  A    +VP+ A S FG  +FCA   +    P   L SDG +  A      + I R
Sbjct:  129 IAARSWTGTVDAVADARIDGATLVIERIRAVEDSVLVLYGALPQTFEWLLRSHALHQKLPFPAHEAGASTFENVPISAFSAFGKVIFCAARSWQPASPSLPLRSDGRIIRAARSGKPDEIER 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75844.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Ankyrin4.420e-2140.50repeat protein n=1 Tax=Enhygromyxa salina TaxID=21... [more]
ankyrin1.590e-2039.50repeat domain-containing protein n=1 Tax=Hyalangiu... [more]
Ankyrin3.440e-1432.79repeat domain-containing protein n=1 Tax=Deltaprot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75844contigH-canaliculatus_M_contigs75844:169..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.782453-CDS-H-canaliculatus_M_contigs75844:168..5341696854095.782453-CDS-H-canaliculatus_M_contigs75844:168..534Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75844 169..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75844.2.1prot_H-canaliculatus_M_contigs75844.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75844 169..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75844.2.1

>prot_H-canaliculatus_M_contigs75844.2.1 ID=prot_H-canaliculatus_M_contigs75844.2.1|Name=mRNA_H-canaliculatus_M_contigs75844.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=122bp
VFARSWSGETLITADAKLEGNELQLHRLYLGEETIDGFGDPVTVVDWMMR
SHAMEERLPLPVDEEAAEFLNSVPLIAMSVFGHRLFCAGVGYSMPPPDGL
LHSDGEVAAAVYGNDVNAIRRL
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mRNA from alignment at H-canaliculatus_M_contigs75844:169..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75844.2.1 ID=mRNA_H-canaliculatus_M_contigs75844.2.1|Name=mRNA_H-canaliculatus_M_contigs75844.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=366bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75844:169..534- (Hapterophycus canaliculatus Oshoro7m male)
GTTTTCGCCCGTAGTTGGTCGGGGGAAACCTTGATCACCGCAGATGCAAA
ATTGGAAGGCAATGAACTTCAATTGCATCGTCTCTATTTGGGCGAAGAAA
CGATAGATGGATTTGGTGATCCTGTCACGGTTGTGGATTGGATGATGCGC
AGCCACGCGATGGAAGAGCGTCTGCCCCTTCCCGTCGATGAAGAAGCCGC
TGAATTTCTTAACTCCGTTCCGCTCATCGCGATGAGTGTTTTTGGGCATC
GCTTATTCTGCGCGGGGGTAGGGTACTCCATGCCACCACCCGATGGTTTA
CTCCACAGTGATGGTGAGGTTGCAGCTGCTGTTTACGGTAACGATGTTAA
CGCGATTCGTAGGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75844:169..534-

>mRNA_H-canaliculatus_M_contigs75844.2.1 ID=mRNA_H-canaliculatus_M_contigs75844.2.1|Name=mRNA_H-canaliculatus_M_contigs75844.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75844:169..534- (Hapterophycus canaliculatus Oshoro7m male)
GTTTTCGCCCGTAGTTGGTCGGGGGAAACCTTGATCACCGCAGATGCAAA
ATTGGAAGGCAATGAACTTCAATTGCATCGTCTCTATTTGGGCGAAGAAA
CGATAGATGGATTTGGTGATCCTGTCACGGTTGTGGATTGGATGATGCGC
AGCCACGCGATGGAAGAGCGTCTGCCCCTTCCCGTCGATGAAGAAGCCGC
TGAATTTCTTAACTCCGTTCCGCTCATCGCGATGAGTGTTTTTGGGCATC
GCTTATTCTGCGCGGGGGTAGGGTACTCCATGCCACCACCCGATGGTTTA
CTCCACAGTGATGGTGAGGTTGCAGCTGCTGTTTACGGTAACGATGTTAA
CGCGATTCGTAGGCTC
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