mRNA_H-canaliculatus_M_contigs75824.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75824.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75824.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75824.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN5_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.170e-32
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:   10 EENKLRDAQDSVQEKGQMGFLRMAAQVDNFRKTSGAGTGDYEADAKAAVLKAMLPAFEPFEAAKE 204
            EEN+LRD QDSVQEKGQMGFLRMAAQVDNFRK+SGAGTGDYEADAKAAVL+AMLPAFEPFEAA+E
Sbjct:    3 EENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEE 67
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75824.1.1 vs.
Match: Co-chaperone (grpE family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM3_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.390e-31
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 LILEENKLRDAQDSVQEKGQMGFLRMAAQVDNFRKTSGAGTGDYEADAKAAVLKAMLPAFEPFEAAKE 204
            L+ EEN+LRD QDSVQEKGQMGFLRMAAQVDNFRK+SGAGTGDYEADAKAAVL+AMLPAFEPFEAA+E
Sbjct:  125 LMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEE 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75824.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.170e-3292.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Co-chaperone2.390e-3189.71grpE family protein n=1 Tax=Ectocarpus siliculosus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75824contigH-canaliculatus_M_contigs75824:309..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LSM3
Preferred namemge1
PFAMsGrpE
Model size225
Max annot lvl2759|Eukaryota
KEGG koko:K03687
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000774,GO:0001405,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006790,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016226,GO:0017038,GO:0017076,GO:0019866,GO:0022607,GO:0030150,GO:0030234,GO:0030554,GO:0031090,GO:0031163,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042026,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0044743,GO:0045184,GO:0046907,GO:0050790,GO:0051082,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1901265,GO:1901363,GO:1990542
Exons1
Evalue3.93e-32
EggNOG OGsCOG0576@1|root,KOG3003@2759|Eukaryota
Ec32 ortholog descriptionco-chaperone grpE family protein
Ec32 orthologEc-09_002170.1
Descriptionadenyl-nucleotide exchange factor activity
Cds size225
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.649293-CDS-H-canaliculatus_M_contigs75824:308..5331696854095.649293-CDS-H-canaliculatus_M_contigs75824:308..533Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75824 309..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75824.1.1prot_H-canaliculatus_M_contigs75824.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75824 309..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75824.1.1

>prot_H-canaliculatus_M_contigs75824.1.1 ID=prot_H-canaliculatus_M_contigs75824.1.1|Name=mRNA_H-canaliculatus_M_contigs75824.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=75bp
LILEENKLRDAQDSVQEKGQMGFLRMAAQVDNFRKTSGAGTGDYEADAKA
AVLKAMLPAFEPFEAAKEVGFVFG*
back to top

mRNA from alignment at H-canaliculatus_M_contigs75824:309..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75824.1.1 ID=mRNA_H-canaliculatus_M_contigs75824.1.1|Name=mRNA_H-canaliculatus_M_contigs75824.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75824:309..533- (Hapterophycus canaliculatus Oshoro7m male)
CTGATCCTGGAGGAAAACAAGCTGAGGGATGCGCAAGACTCGGTTCAGGA
GAAAGGGCAGATGGGCTTCCTGAGGATGGCGGCGCAGGTAGACAACTTCC
GCAAGACGAGCGGGGCGGGCACGGGGGACTACGAGGCCGATGCCAAGGCA
GCGGTGCTGAAGGCGATGCTGCCGGCGTTCGAGCCCTTCGAGGCGGCCAA
GGAGGTGGGATTCGTCTTCGGCTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75824:309..533-

>mRNA_H-canaliculatus_M_contigs75824.1.1 ID=mRNA_H-canaliculatus_M_contigs75824.1.1|Name=mRNA_H-canaliculatus_M_contigs75824.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75824:309..533- (Hapterophycus canaliculatus Oshoro7m male)
CTGATCCTGGAGGAAAACAAGCTGAGGGATGCGCAAGACTCGGTTCAGGA
GAAAGGGCAGATGGGCTTCCTGAGGATGGCGGCGCAGGTAGACAACTTCC
GCAAGACGAGCGGGGCGGGCACGGGGGACTACGAGGCCGATGCCAAGGCA
GCGGTGCTGAAGGCGATGCTGCCGGCGTTCGAGCCCTTCGAGGCGGCCAA
GGAGGTGGGATTCGTCTTCGGCTGA
back to top