mRNA_H-canaliculatus_M_contigs75800.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75800.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75800.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Match: MIF4G (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS3_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.500e-21
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLSHRSTPWSFVE 177
            +FDKLADQLL LP+DS KMLRTLVQ+V +KA+DEPTF DMYADLCVRL+ RST W+FV+
Sbjct:  805 KFDKLADQLLDLPMDSLKMLRTLVQAVFDKALDEPTFVDMYADLCVRLNERSTSWAFVK 863          
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Match: MI (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.270e-20
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1
Query:    1 QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLSHRSTPWSF 171
            +FDKLADQLL LP+DS KMLRTLVQ+V +KA+DEPTF DMYADLCVRL+ RST W+F
Sbjct:  352 KFDKLADQLLDLPMDSLKMLRTLVQAVFDKALDEPTFVDMYADLCVRLNERSTSWAF 408          
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Match: MIF4G (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGV1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.030e-14
Identity = 33/60 (55.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    1 QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLSHRSTPWSFVEV 180
            +FD+L+ QLL +P++S  ML+ LV+ V +KAI+E  FADMYADLCVRL  +S+ W+F++V
Sbjct:  120 KFDRLSQQLLEIPMESFDMLKALVEQVFDKAIEENFFADMYADLCVRLHSQSSGWTFIKV 179          
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYN7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.670e-12
Identity = 29/59 (49.15%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLSHRSTPWSFVE 177
            +F+KL+ QL+ LP++S +ML  ++  + +KA+DEP F DMYAD+CVRL+ +   WSFV+
Sbjct:  209 KFEKLSHQLVTLPMESSEMLTVVIGLIFDKALDEPNFGDMYADMCVRLNEKFKFWSFVK 267          
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5G1_PHATC)

HSP 1 Score: 66.2 bits (160), Expect = 3.700e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLS 147
            +FDKLA Q+L +PL S  ML+ ++ +V +KAIDEPTF DMYADLC RLS
Sbjct:  477 KFDKLATQMLEIPLTSSDMLKMMINNVYDKAIDEPTFGDMYADLCKRLS 525          
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9X6_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 4.900e-11
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLSHRSTPWSFVE 177
            +FD+L+ QL+A+ ++S +ML  ++  V +KA+DEP F DMYADLCV+L   S  WSFV+
Sbjct:   58 KFDRLSAQLVAVRMESSEMLNAVIGLVFDKALDEPNFGDMYADLCVQLQANSRCWSFVK 116          
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNW1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.630e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLSHRSTPWSFVEV 180
            +FDKL++Q+  +P+ S +ML  ++  V  KAIDEP F ++YADLCVRLS ++   SFV++
Sbjct:   19 KFDKLSNQMCDIPILSYEMLTMMIHVVYEKAIDEPHFGELYADLCVRLSQKAKSNSFVKI 78          
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P3H7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.290e-10
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLSHRSTPWSFVEV 180
            +FD+L+ Q++ +P+ S  +L  ++++V +KAIDEP+F DMYADLCVRLS      +FV +
Sbjct:  445 KFDRLSQQMVEIPVSSYAVLTMMIENVFDKAIDEPSFGDMYADLCVRLSQSVVGQNFVHI 504          
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Match: MI (domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UMY6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.300e-10
Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLSHRSTPWSFVEV 180
            +FD+LA QL ++ ++S +ML+T+++ + +KA+ EP F DMYADLCV L      WSF+++
Sbjct:  608 KFDRLAGQLTSINMESLEMLQTVIKIIFDKAVSEPNFCDMYADLCVHLETNWKVWSFLKI 667          
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Match: MI (domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHF8_BRELC)

HSP 1 Score: 63.5 bits (153), Expect = 3.310e-10
Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLSHRSTPWSFVEV 180
            +FD+LA QL ++ ++S +ML+T+++ + +KA+ EP F DMYADLCV L      WSF+++
Sbjct: 1192 KFDRLAGQLTSINMESLEMLQTVIKIIFDKAVSEPNFCDMYADLCVHLEANWQVWSFLKI 1251          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75800.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
MIF4G3.500e-2176.27domain-containing protein n=1 Tax=Ectocarpus silic... [more]
MI2.270e-2077.19domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
MIF4G6.030e-1455.00domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical7.670e-1249.15protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Predicted3.700e-1163.27protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Hypothetical4.900e-1150.85protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical8.630e-1148.33protein (Fragment) n=1 Tax=Attheya septentrionalis... [more]
Hypothetical3.290e-1046.67protein n=1 Tax=Amphora coffeiformis TaxID=265554 ... [more]
MI3.300e-1045.00domain-containing protein n=6 Tax=Phytophthora Tax... [more]
MI3.310e-1045.00domain-containing protein n=1 Tax=Bremia lactucae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75800contigH-canaliculatus_M_contigs75800:42..233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FZS3
PFAMsMA3,MIF4G
Model size192
Max annot lvl2759|Eukaryota
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.74e-22
EggNOG OGsKOG0401@1|root,KOG0401@2759|Eukaryota
Descriptiontranslation initiation factor activity
Cds size192
COG categoryS
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.6011276-CDS-H-canaliculatus_M_contigs75800:41..2331696854095.6011276-CDS-H-canaliculatus_M_contigs75800:41..233Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75800 42..233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75800.1.1prot_H-canaliculatus_M_contigs75800.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75800 42..233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75800.1.1

>prot_H-canaliculatus_M_contigs75800.1.1 ID=prot_H-canaliculatus_M_contigs75800.1.1|Name=mRNA_H-canaliculatus_M_contigs75800.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=64bp
QFDKLADQLLALPLDSKKMLRTLVQSVCNKAIDEPTFADMYADLCVRLSH
RSTPWSFVEVRIM*
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mRNA from alignment at H-canaliculatus_M_contigs75800:42..233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75800.1.1 ID=mRNA_H-canaliculatus_M_contigs75800.1.1|Name=mRNA_H-canaliculatus_M_contigs75800.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75800:42..233+ (Hapterophycus canaliculatus Oshoro7m male)
CAGTTCGACAAGCTGGCGGACCAGCTGCTGGCCCTTCCCTTAGACTCGAA GAAGATGCTCCGCACCCTCGTGCAGTCGGTCTGCAACAAGGCCATCGACG AGCCAACCTTCGCCGACATGTATGCAGACTTGTGCGTTCGCCTGAGCCAC AGGAGCACTCCGTGGTCCTTTGTCGAGGTGCGGATCATGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75800:42..233+

>mRNA_H-canaliculatus_M_contigs75800.1.1 ID=mRNA_H-canaliculatus_M_contigs75800.1.1|Name=mRNA_H-canaliculatus_M_contigs75800.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75800:42..233+ (Hapterophycus canaliculatus Oshoro7m male)
CAGTTCGACAAGCTGGCGGACCAGCTGCTGGCCCTTCCCTTAGACTCGAA
GAAGATGCTCCGCACCCTCGTGCAGTCGGTCTGCAACAAGGCCATCGACG
AGCCAACCTTCGCCGACATGTATGCAGACTTGTGCGTTCGCCTGAGCCAC
AGGAGCACTCCGTGGTCCTTTGTCGAGGTGCGGATCATGTGA
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