mRNA_H-canaliculatus_M_contigs75788.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75788.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75788.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Match: Sugar (ABC transporter substrate-binding protein n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F641_9RHOB)

HSP 1 Score: 356 bits (913), Expect = 1.020e-120
Identity = 159/178 (89.33%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:    1 TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWADTAMGEELASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQKVLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDRVRETFANWAKLVEMGAFVDDHQNKDWQQ 534
            TQIRNFLTAN+PD+ATWYAANRMTPYV AGLFED+SDLW+DT +GEELASTKGAMTID KQWGVPYTYYQWG+YYRKDIYEDLGI EPA+FDEML+NCQKV+DAGMKCYTIGTKWLWTASGWFDY+NMRTHGFDFHMELA+G VAWTD RVRETFANW KLV+MGAFVDDHQNKDWQQ
Sbjct:   73 TQIRNFLTANSPDIATWYAANRMTPYVKAGLFEDISDLWSDTVIGEELASTKGAMTIDGKQWGVPYTYYQWGIYYRKDIYEDLGIKEPANFDEMLSNCQKVVDAGMKCYTIGTKWLWTASGWFDYLNMRTHGFDFHMELASGKVAWTDARVRETFANWRKLVDMGAFVDDHQNKDWQQ 250
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BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Match: ABC (transporter substrate-binding protein n=2 Tax=unclassified Roseobacter TaxID=196798 RepID=UPI001C5D986F)

HSP 1 Score: 319 bits (817), Expect = 3.640e-106
Identity = 140/178 (78.65%), Postives = 163/178 (91.57%), Query Frame = 1 
Query:    1 TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWADTAMGEELASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQKVLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDRVRETFANWAKLVEMGAFVDDHQNKDWQQ 534
            TQIRNFLTA+APDVATWYAANRM+PYV AGLFEDVSDLWA+ A+ + LASTKGAMTID KQWGVPYTYYQWG+YYRKDIYE+LG++EPA F+EM +NCQ +LD+G KCYTIGTK+LWTA GWFDY+NMRTHGFDFHMELA G+V WTDDRV++TFANW +L++MGAFVD+HQN  WQ+
Sbjct:   73 TQIRNFLTADAPDVATWYAANRMSPYVKAGLFEDVSDLWAEPAIADNLASTKGAMTIDGKQWGVPYTYYQWGIYYRKDIYEELGLNEPATFEEMKSNCQAILDSGRKCYTIGTKFLWTAGGWFDYLNMRTHGFDFHMELANGDVKWTDDRVKQTFANWRELIDMGAFVDNHQNYSWQE 250
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BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Match: Sugar (ABC transporter substrate-binding protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2E0ACC6_9RHOB)

HSP 1 Score: 318 bits (814), Expect = 1.040e-105
Identity = 138/179 (77.09%), Postives = 162/179 (90.50%), Query Frame = 1 
Query:    1 TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWAD-TAMGEELASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQKVLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDRVRETFANWAKLVEMGAFVDDHQNKDWQQ 534
            TQIRNFL+A+APDV TWYAANRMTPYV AGLFEDVSD+WAD T +  +LASTKGAMTID KQWGV YTYYQWG+YYRKDIY++LG+SEPA+FDEML+NC+ ++D+G KCYTIG KWLWT +GWFDY+N+RTHGFDFHM++A G + WTDDRVR+TF NWAKL+ MGAF+DDHQNKDWQQ
Sbjct:   73 TQIRNFLSADAPDVLTWYAANRMTPYVEAGLFEDVSDMWADGTDIANQLASTKGAMTIDGKQWGVAYTYYQWGIYYRKDIYDELGLSEPANFDEMLSNCKAMIDSGRKCYTIGNKWLWTGAGWFDYLNLRTHGFDFHMQMARGEIEWTDDRVRKTFDNWAKLIRMGAFIDDHQNKDWQQ 251
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BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Match: Sugar (ABC transporter substrate-binding protein n=2 Tax=Sulfitobacter sp. SK012 TaxID=1389005 RepID=A0A345QTP2_9RHOB)

HSP 1 Score: 317 bits (811), Expect = 2.030e-105
Identity = 136/178 (76.40%), Postives = 161/178 (90.45%), Query Frame = 1 
Query:    1 TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWADTAMGEELASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQKVLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDRVRETFANWAKLVEMGAFVDDHQNKDWQQ 534
            TQIRNFLTA+APDVATWYAANRMTPYV+AGLFED+SDLWA+  + E LASTKGAMTID KQWGVPYTYYQWG+YYRKDIY++LG+SEP +FDEM +NCQ +LD+G KCYTIG+K+LWTA GWFDY+NMRTHGFDFHME+A G + WTDDRVRETFANW +L++MG ++D+HQN  WQ+
Sbjct:   61 TQIRNFLTADAPDVATWYAANRMTPYVSAGLFEDISDLWAEPEIAENLASTKGAMTIDGKQWGVPYTYYQWGIYYRKDIYDELGLSEPTNFDEMKSNCQVILDSGRKCYTIGSKFLWTAGGWFDYLNMRTHGFDFHMEMARGEIEWTDDRVRETFANWRELIDMGGYIDNHQNYSWQE 238
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BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Match: Sugar (ABC transporter substrate-binding protein n=1 Tax=Thalassococcus sp. S3 TaxID=2017482 RepID=A0A4P6MCU4_9RHOB)

HSP 1 Score: 314 bits (805), Expect = 2.390e-104
Identity = 137/178 (76.97%), Postives = 161/178 (90.45%), Query Frame = 1 
Query:    1 TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWADTAMGEELASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQKVLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDRVRETFANWAKLVEMGAFVDDHQNKDWQQ 534
            TQIRNFLTANAPDVATWYAANRM PYV AGLFEDVSDLWA+  + E LASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYE+LG+SEPA F+EM +NCQ +L++G KCYTIGTK+LWTA GWFDY+NMRT+GFDFHM+LA G ++W D+RVR+TFANW +L++MGAF+D+HQ+  WQ+
Sbjct:   73 TQIRNFLTANAPDVATWYAANRMRPYVEAGLFEDVSDLWAEPEIAENLASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEELGLSEPASFEEMKSNCQAILESGRKCYTIGTKFLWTAGGWFDYLNMRTNGFDFHMQLAGGEISWEDERVRQTFANWRELIDMGAFIDNHQSYSWQE 250
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BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Match: Carbohydrate (ABC transporter substrate-binding protein, CUT1 family n=5 Tax=Marivita TaxID=659428 RepID=A0A1M5QIC3_9RHOB)

HSP 1 Score: 314 bits (805), Expect = 2.550e-104
Identity = 138/178 (77.53%), Postives = 160/178 (89.89%), Query Frame = 1 
Query:    1 TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWADTAMGEELASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQKVLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDRVRETFANWAKLVEMGAFVDDHQNKDWQQ 534
            TQIRNFLTA+APDVATWYAANRM PYV AGLFEDVSDLWA+  + E LASTKGAMTID KQWGVPYTYYQWGVYYRKD+Y+  G+SEP +FDEM +NCQ +LD G+KCYTIGTK+LWTA GWFDY+N+RTHG+DFHME+AAG+V WTDDRVRETFANW +L++MGA+VD+HQN  WQ+
Sbjct:   75 TQIRNFLTADAPDVATWYAANRMRPYVEAGLFEDVSDLWAEPEIAENLASTKGAMTIDGKQWGVPYTYYQWGVYYRKDLYDQYGLSEPTNFDEMKSNCQTLLDNGVKCYTIGTKFLWTAGGWFDYLNLRTHGYDFHMEMAAGDVPWTDDRVRETFANWRELIDMGAYVDNHQNYSWQE 252
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BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Match: ABC (transporter, substrate-binding protein, putative n=6 Tax=Roseobacter TaxID=2433 RepID=Q165F5_ROSDO)

HSP 1 Score: 313 bits (801), Expect = 9.960e-104
Identity = 139/178 (78.09%), Postives = 159/178 (89.33%), Query Frame = 1 
Query:    1 TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWADTAMGEELASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQKVLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDRVRETFANWAKLVEMGAFVDDHQNKDWQQ 534
            TQIRNFLTA+APDVATWYAANRMTPYV AGLFEDVSDLWA+  + E LASTKGAMTID KQWGVPYTYYQWG+YYRKDIYE+LG+SEPA FDEM +NCQ ++D+G  CYTIG+K+LWTA GWFDY+NMRT+GFDFHM LAAG V WTDDRVR TFANW +L++MGAFV++HQN  WQ+
Sbjct:   73 TQIRNFLTADAPDVATWYAANRMTPYVTAGLFEDVSDLWAEPEIAENLASTKGAMTIDGKQWGVPYTYYQWGIYYRKDIYEELGLSEPATFDEMKSNCQVIIDSGRACYTIGSKFLWTAGGWFDYLNMRTNGFDFHMALAAGEVKWTDDRVRATFANWRELIDMGAFVENHQNYSWQE 250
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BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Match: ABC (transporter substrate-binding protein n=2 Tax=Roseobacter cerasinus TaxID=2602289 RepID=A0A640VQ82_9RHOB)

HSP 1 Score: 311 bits (797), Expect = 3.890e-103
Identity = 136/178 (76.40%), Postives = 159/178 (89.33%), Query Frame = 1 
Query:    1 TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWADTAMGEELASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQKVLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDRVRETFANWAKLVEMGAFVDDHQNKDWQQ 534
            TQIRNFLTA+APDVATWYAANRMTP+V AGLFEDVSDLW +  + E LASTKGAMTIDDKQWGV YTYYQWG+YYRKDIY++LG+SEP +FDEM +NC  ++++G KCYTIGTK+LWTA GWFDY+NMRTHGFDFHMELA G V WTDDRVR+TFANW +L++MGAFV++HQN  WQ+
Sbjct:   73 TQIRNFLTADAPDVATWYAANRMTPFVEAGLFEDVSDLWQEPEIAEALASTKGAMTIDDKQWGVAYTYYQWGIYYRKDIYDELGLSEPVNFDEMKSNCAAIIESGRKCYTIGTKFLWTAGGWFDYLNMRTHGFDFHMELAQGKVKWTDDRVRQTFANWRELIDMGAFVENHQNYSWQE 250
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BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Match: Multiple (sugar-binding protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A238J0T5_9RHOB)

HSP 1 Score: 310 bits (794), Expect = 1.220e-102
Identity = 135/178 (75.84%), Postives = 162/178 (91.01%), Query Frame = 1 
Query:    1 TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWADTAMGEELASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQKVLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDRVRETFANWAKLVEMGAFVDDHQNKDWQQ 534
            TQIRNFLTA+APDVATWYAANRM PYV AGLFEDVSDLWA+  + E LASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYE+LG+SEP+++DE  ANCQ ++D+G  C+TIG+K+LWTA GWFDY+N+RT+GFDFHM++AAG+V WTDDRVR+TFANW +L++MGAFV++HQN  WQ+
Sbjct:   76 TQIRNFLTADAPDVATWYAANRMRPYVEAGLFEDVSDLWAEPEIAENLASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEELGLSEPSNWDEFKANCQAIVDSGRSCFTIGSKFLWTAGGWFDYLNLRTNGFDFHMDMAAGDVEWTDDRVRQTFANWRELIDMGAFVENHQNYSWQE 253
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Match: Sugar (ABC transporter substrate-binding protein n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2D5BEK5_9RHOB)

HSP 1 Score: 305 bits (782), Expect = 7.260e-101
Identity = 131/179 (73.18%), Postives = 161/179 (89.94%), Query Frame = 1 
Query:    1 TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWAD-TAMGEELASTKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQKVLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDRVRETFANWAKLVEMGAFVDDHQNKDWQQ 534
            TQIRNFL+A+APDV TWYAANRM PYV AGL EDVSD+WAD T + +ELASTKGA+T+D KQWGVPYTYYQWG+YYRKDIY++LG+SEP++FD+ML+NC+ ++ +G KCYTIG KWLWT +GWFDY+N+RT+GF+FHM++AAG + WTD RVRETFANW KL+ MGAF+DD+QNKDWQQ
Sbjct:   73 TQIRNFLSADAPDVLTWYAANRMKPYVEAGLLEDVSDMWADGTDIAKELASTKGALTVDGKQWGVPYTYYQWGIYYRKDIYQELGLSEPSNFDDMLSNCEAMIASGRKCYTIGNKWLWTGAGWFDYLNLRTNGFNFHMQMAAGEIEWTDPRVRETFANWGKLIRMGAFIDDNQNKDWQQ 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75788.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Sugar1.020e-12089.33ABC transporter substrate-binding protein n=1 Tax=... [more]
ABC3.640e-10678.65transporter substrate-binding protein n=2 Tax=uncl... [more]
Sugar1.040e-10577.09ABC transporter substrate-binding protein n=2 Tax=... [more]
Sugar2.030e-10576.40ABC transporter substrate-binding protein n=2 Tax=... [more]
Sugar2.390e-10476.97ABC transporter substrate-binding protein n=1 Tax=... [more]
Carbohydrate2.550e-10477.53ABC transporter substrate-binding protein, CUT1 fa... [more]
ABC9.960e-10478.09transporter, substrate-binding protein, putative n... [more]
ABC3.890e-10376.40transporter substrate-binding protein n=2 Tax=Rose... [more]
Multiple1.220e-10275.84sugar-binding protein n=3 Tax=Rhodobacterales TaxI... [more]
Sugar7.260e-10173.18ABC transporter substrate-binding protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75788contigH-canaliculatus_M_contigs75788:1..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog375451.RD1_2862
PFAMsSBP_bac_1
Model size534
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02027
KEGG TC3.A.1.1
KEGG ModuleM00207
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.63e-104
EggNOG OGsCOG1653@1|root,COG1653@2|Bacteria,1N98V@1224|Proteobacteria,2TSIS@28211|Alphaproteobacteria,2P2RC@2433|Roseobacter
DescriptionBacterial extracellular solute-binding protein
Cds size534
COG categoryG
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.2115555-CDS-H-canaliculatus_M_contigs75788:0..5341696854095.2115555-CDS-H-canaliculatus_M_contigs75788:0..534Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75788 1..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75788.1.1prot_H-canaliculatus_M_contigs75788.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75788 1..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75788.1.1

>prot_H-canaliculatus_M_contigs75788.1.1 ID=prot_H-canaliculatus_M_contigs75788.1.1|Name=mRNA_H-canaliculatus_M_contigs75788.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=178bp
TQIRNFLTANAPDVATWYAANRMTPYVNAGLFEDVSDLWADTAMGEELAS
TKGAMTIDDKQWGVPYTYYQWGVYYRKDIYEDLGISEPADFDEMLANCQK
VLDAGMKCYTIGTKWLWTASGWFDYINMRTHGFDFHMELAAGNVAWTDDR
VRETFANWAKLVEMGAFVDDHQNKDWQQ
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mRNA from alignment at H-canaliculatus_M_contigs75788:1..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75788.1.1 ID=mRNA_H-canaliculatus_M_contigs75788.1.1|Name=mRNA_H-canaliculatus_M_contigs75788.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=534bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75788:1..534- (Hapterophycus canaliculatus Oshoro7m male)
ACGCAAATCCGCAACTTCCTGACCGCCAACGCGCCAGATGTTGCAACATG
GTACGCCGCCAACCGCATGACACCCTACGTCAATGCCGGTCTGTTTGAAG
ACGTGTCCGATCTGTGGGCTGACACCGCGATGGGCGAAGAGCTGGCCTCC
ACCAAGGGTGCGATGACCATCGACGACAAGCAGTGGGGCGTGCCGTACAC
GTACTACCAATGGGGCGTTTACTACCGCAAAGACATCTATGAAGATCTGG
GCATCAGCGAGCCTGCGGACTTCGACGAGATGCTGGCCAACTGCCAGAAA
GTCCTCGATGCGGGCATGAAATGCTACACCATCGGCACAAAATGGCTCTG
GACCGCGTCAGGTTGGTTTGATTACATCAACATGCGCACCCATGGCTTCG
ATTTCCACATGGAGCTTGCAGCCGGCAACGTCGCTTGGACAGACGACCGC
GTGCGCGAAACTTTCGCAAACTGGGCCAAGCTTGTCGAAATGGGTGCCTT
TGTTGACGATCACCAGAACAAAGACTGGCAGCAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75788:1..534-

>mRNA_H-canaliculatus_M_contigs75788.1.1 ID=mRNA_H-canaliculatus_M_contigs75788.1.1|Name=mRNA_H-canaliculatus_M_contigs75788.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75788:1..534- (Hapterophycus canaliculatus Oshoro7m male)
ACGCAAATCCGCAACTTCCTGACCGCCAACGCGCCAGATGTTGCAACATG
GTACGCCGCCAACCGCATGACACCCTACGTCAATGCCGGTCTGTTTGAAG
ACGTGTCCGATCTGTGGGCTGACACCGCGATGGGCGAAGAGCTGGCCTCC
ACCAAGGGTGCGATGACCATCGACGACAAGCAGTGGGGCGTGCCGTACAC
GTACTACCAATGGGGCGTTTACTACCGCAAAGACATCTATGAAGATCTGG
GCATCAGCGAGCCTGCGGACTTCGACGAGATGCTGGCCAACTGCCAGAAA
GTCCTCGATGCGGGCATGAAATGCTACACCATCGGCACAAAATGGCTCTG
GACCGCGTCAGGTTGGTTTGATTACATCAACATGCGCACCCATGGCTTCG
ATTTCCACATGGAGCTTGCAGCCGGCAACGTCGCTTGGACAGACGACCGC
GTGCGCGAAACTTTCGCAAACTGGGCCAAGCTTGTCGAAATGGGTGCCTT
TGTTGACGATCACCAGAACAAAGACTGGCAGCAA
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