mRNA_H-canaliculatus_M_contigs75780.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75780.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75780.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Match: Tetratricopeptide (repeat protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI00198984BC)

HSP 1 Score: 69.3 bits (168), Expect = 3.180e-11
Identity = 42/125 (33.60%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    1 AWHAIKEYAKASYDYEAALRCQARFGTRWRHVAWFLATCPDATYRDGQRAKDLMKQERERREVVATVCLAIDAAAHAECGDFRSAIQLQNDYLRNVEKDREIGSASKLDIVIPDNALSRYQQSKP 375
            A+H +KEYAKA  DY  AL+ +  +      +AW LATCPDA +RDG++A +L  +  E  +      +   AAA+AE G F  A++ +   +  +EK  +  S  K+      + L  Y++++P
Sbjct:  643 AYHELKEYAKAEEDYAIALKSRPDYPNLLVSIAWQLATCPDARFRDGKKAMELATKANEEFKWKLPEHVDALAAAYAENGQFAEAVKWEKKAMELLEKG-QTDSRKKM-----QSRLELYREARP 761          
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9HZB1_9ZZZZ)

HSP 1 Score: 62.0 bits (149), Expect = 3.710e-9
Identity = 39/120 (32.50%), Postives = 60/120 (50.00%), Query Frame = 1
Query:   16 KEYAKASYDYEAALRCQARFGTRWRHVAWFLATCPDATYRDGQRAKDLMKQERERREVVATVCLAIDAAAHAECGDFRSAIQLQNDYLRNVEKDREIGSASKLDIVIPDNALSRYQQSKP 375
            K++A+A   +EA L+          H+AW+LATCPDA  R+G+RA  L +   ER      + L   AAAHAE G F+SA+ +  + +      +    A ++   I     + Y  +KP
Sbjct:   91 KKFAQAIRIWEAGLKSNPGSAVLSYHLAWWLATCPDAAVRNGKRAAQLAQALCERTGRKDALALDALAAAHAEIGQFKSAVAVATEAMNLARAQKRTALAGEISARI-----NLYMAAKP 205          
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Planctomyces sp. SCGC AG-212-M04 TaxID=1799657 RepID=A0A177R1Z9_9PLAN)

HSP 1 Score: 60.5 bits (145), Expect = 3.150e-8
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query:   13 IKEYAKASYDYEAALRCQARFGTRWRHVAWFLATCPDATYRDGQRAKDLMKQERERREVVATVCLAIDAAAHAECGDFRSAIQLQNDYLRNVEKDREIGSASKLDIVIPDNA--LSRYQQSKPL 378
            + ++ K+  DY   L  +      W   AW  ATCPDA +RDGQRA  L ++  E         ++I AAA+AE G +  AI++Q+   R +E+       +KLD   P  A  L  +QQSKPL
Sbjct:  202 LGQFDKSQADYREQLEIKP--DESWSDWAWQSATCPDAQFRDGQRAIRLAQKSCENSNWSIPANISILAAAYAEAGRYDDAIKMQS---RAIEE-------NKLDYWKPIFAKRLESFQQSKPL 313          
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Match: Tetratricopeptide (repeat protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7F0P7_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 3.830e-8
Identity = 40/121 (33.06%), Postives = 60/121 (49.59%), Query Frame = 1
Query:   13 IKEYAKASYDYEAALRCQARFGTRWRHVAWFLATCPDATYRDGQRAKDLMKQERERREVVATVCLAIDAAAHAECGDFRSAIQLQNDYLRNVEKDREIGSASKLDIVIPDNALSRYQQSKP 375
            I ++A+A  D+E AL+          ++AW LAT PD   RDG+RA +L  +  E  +      L+  AAA+AE GDF+SA++     +   +KD E G          +  L  Y+  KP
Sbjct:  406 IGKHAEAIADFEKALKLAEPDSGTLNNLAWVLATSPDDELRDGRRAVELALKACELTQYGQAHILSTLAAAYAESGDFKSAVEWSKKAIELDKKDEEKGDDGDNVGDALEKELQSYRDGKP 526          
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Olavius algarvensis associated proteobacterium Delta 3 TaxID=426688 RepID=A0A7I8MW85_9DELT)

HSP 1 Score: 59.7 bits (143), Expect = 4.930e-8
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 1
Query:   94 VAWFLATCPDATYRDGQRAKDLMKQERERREVVATVC-LAIDAAAHAECGDFRSAIQLQNDYLRNVEKDREIGSASKLDIVIPDNALSRYQQSKP 375
            +AW LATCPDA YRDG+ A DL K+      + +  C L   AAA+AE G ++ A+++Q   +  +E + E G   +L     +  L +Y+ +KP
Sbjct:  184 LAWILATCPDAKYRDGREAVDLAKKA---LSITSDSCGLDSLAAAYAEIGKYQEAVKIQEQCIYQLESEGEKGRLDEL-----NKRLKQYKNNKP 270          
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6FK91_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.140e-7
Identity = 36/95 (37.89%), Postives = 48/95 (50.53%), Query Frame = 1
Query:   22 YAKASYDYEAALRCQARFGTRWRHVAWFLATCPDATYRDGQRAKDLMKQERERREVVATVCLAIDAAAHAECGDFRSAIQLQNDYLRNVEKDREI 306
            Y  A  D E A+           + AW LATCPD++ RDGQRA    +   E  +  + + L   AAA AE GDFRSA++ +   L   E DR +
Sbjct:  135 YHAARVDLEKAIALDKNNVLAHNNYAWLLATCPDSSVRDGQRAVQHARGASESLKHGSPIVLDTLAAAEAEIGDFRSAVKDEKRALSLAEGDRSL 229          
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Match: TPR (repeat-containing protein YrrB n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517QXI9_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 3.430e-7
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   94 VAWFLATCPDATYRDGQRAKDLMKQERERREVVATVCLAIDAAAHAECGDFRSAIQLQNDYLRNVEKDREIGSASKLDIVIPDNALSRYQQSKP 375
            +AW LATCPDA YRDG+RA +L  +  E         +   AAA+AE GD+  A+++Q   ++ V  D++    S+L++         YQ  KP
Sbjct:  565 LAWLLATCPDAAYRDGERAVELGTKACELSGWETGNWIDTLAAAYAEAGDWEKAVEMQRKAIKIVPADQKEDFRSRLEL---------YQSEKP 649          
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Match: Tetratricopeptide (repeat protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4RNT7_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 1.190e-6
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   91 HVAWFLATCPDATYRDGQRAKDLMKQERERREVVATVCLAIDAAAHAECGDFRSAIQLQNDYLRNVEKDREIGSASKLDIVIPDNALSRYQQSK 372
            ++AW L+TCPD  YRDG++A  + K+  +         L   AAA+AE G+F++AI++Q + +R +EK  ++    +L     +N LS Y++ +
Sbjct:  579 NLAWLLSTCPDPQYRDGKQAIKIAKKGNDLNP--GAYMLDTLAAAYAENGNFKTAIEMQEEAIRILEKQGKLNLIREL-----ENHLSAYKREE 665          
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D2TLL8_9PLAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.590e-6
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   13 IKEYAKASYDYEAALRCQARFGTRWRHVAWFLATCPDATYRDGQRAKDLMKQERERREVVATVCLAIDAAAHAECGDFRSAIQ 261
            + ++A+A  D+E AL  +    +   ++AW LAT PD   RDG RA +L  +  +  E   +  L+  AAA+AE GDF+SAI+
Sbjct:  424 VGKHAEAIADFEKALVLRQEDSSLLNNLAWVLATSPDDPVRDGLRAIELATKACQLTEYKKSHILSTLAAAYAEAGDFKSAIE 506          
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5N8T2_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.600e-6
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 1
Query:   10 AIKEYAKASYDYEAAL-RCQARFGTRWRHVAWFLATCPDATYRDGQRAKDLMKQERERREVVATVCLAIDAAAHAECGDFRSAIQLQNDYLR 282
            A  EY++A  D+E  L R +         VAWFLATCPD + RDG+++  L  +  E  +      L   AAA+AE GDF  AI+ Q++ L+
Sbjct:  481 ARNEYSQARADFERVLERSRDPQARVLNAVAWFLATCPDESARDGRKSVPLATKACELTQWKNASLLDTLAAAYAEAGDFDQAIKWQSETLK 572          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75780.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Tetratricopeptide3.180e-1133.60repeat protein n=1 Tax=Pirellulaceae bacterium Tax... [more]
Uncharacterized3.710e-932.50protein (Fragment) n=1 Tax=marine sediment metagen... [more]
Uncharacterized3.150e-836.29protein n=1 Tax=Planctomyces sp. SCGC AG-212-M04 T... [more]
Tetratricopeptide3.830e-833.06repeat protein n=1 Tax=Pirellulaceae bacterium Tax... [more]
Uncharacterized4.930e-836.84protein n=1 Tax=Olavius algarvensis associated pro... [more]
Uncharacterized1.140e-737.89protein n=3 Tax=Verrucomicrobia bacterium TaxID=20... [more]
TPR3.430e-736.17repeat-containing protein YrrB n=1 Tax=Planctomyce... [more]
Tetratricopeptide1.190e-634.04repeat protein n=1 Tax=Desulfobacteraceae bacteriu... [more]
Uncharacterized1.590e-638.55protein n=2 Tax=Planctomycetaceae bacterium TaxID=... [more]
Uncharacterized1.600e-639.13protein n=1 Tax=Verrucomicrobia bacterium TaxID=20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75780contigH-canaliculatus_M_contigs75780:153..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1210884.HG799463_gene10324
PFAMsTPR_1,TPR_11,TPR_16,TPR_2,TPR_8
Model size378
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.05e-10
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,2IZWD@203682|Planctomycetes
DescriptionCOG0457 FOG TPR repeat
Cds size378
COG categoryKLT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.1700258-CDS-H-canaliculatus_M_contigs75780:152..5301696854095.1700258-CDS-H-canaliculatus_M_contigs75780:152..530Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75780 153..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75780.1.1prot_H-canaliculatus_M_contigs75780.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75780 153..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75780.1.1

>prot_H-canaliculatus_M_contigs75780.1.1 ID=prot_H-canaliculatus_M_contigs75780.1.1|Name=mRNA_H-canaliculatus_M_contigs75780.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=126bp
AWHAIKEYAKASYDYEAALRCQARFGTRWRHVAWFLATCPDATYRDGQRA
KDLMKQERERREVVATVCLAIDAAAHAECGDFRSAIQLQNDYLRNVEKDR
EIGSASKLDIVIPDNALSRYQQSKPL
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mRNA from alignment at H-canaliculatus_M_contigs75780:153..530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75780.1.1 ID=mRNA_H-canaliculatus_M_contigs75780.1.1|Name=mRNA_H-canaliculatus_M_contigs75780.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=378bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75780:153..530- (Hapterophycus canaliculatus Oshoro7m male)
GCTTGGCATGCGATCAAGGAATACGCGAAAGCGTCTTACGATTACGAGGC CGCGCTGCGGTGCCAAGCCCGATTCGGGACACGATGGCGACACGTCGCTT GGTTTCTGGCAACTTGCCCGGATGCAACGTACCGCGACGGGCAGCGAGCG AAAGATCTGATGAAGCAAGAACGAGAGCGGCGCGAAGTCGTTGCGACGGT GTGCTTAGCGATCGATGCGGCCGCGCACGCGGAGTGCGGGGATTTTCGAA GTGCGATTCAACTGCAAAATGACTATTTGCGAAACGTTGAGAAAGATCGC GAAATCGGGTCAGCATCCAAGTTAGACATCGTCATTCCGGACAACGCGTT GTCTCGGTACCAACAAAGCAAGCCGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75780:153..530-

>mRNA_H-canaliculatus_M_contigs75780.1.1 ID=mRNA_H-canaliculatus_M_contigs75780.1.1|Name=mRNA_H-canaliculatus_M_contigs75780.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=378bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75780:153..530- (Hapterophycus canaliculatus Oshoro7m male)
GCTTGGCATGCGATCAAGGAATACGCGAAAGCGTCTTACGATTACGAGGC
CGCGCTGCGGTGCCAAGCCCGATTCGGGACACGATGGCGACACGTCGCTT
GGTTTCTGGCAACTTGCCCGGATGCAACGTACCGCGACGGGCAGCGAGCG
AAAGATCTGATGAAGCAAGAACGAGAGCGGCGCGAAGTCGTTGCGACGGT
GTGCTTAGCGATCGATGCGGCCGCGCACGCGGAGTGCGGGGATTTTCGAA
GTGCGATTCAACTGCAAAATGACTATTTGCGAAACGTTGAGAAAGATCGC
GAAATCGGGTCAGCATCCAAGTTAGACATCGTCATTCCGGACAACGCGTT
GTCTCGGTACCAACAAAGCAAGCCGCTG
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