mRNA_H-canaliculatus_M_contigs7578.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7578.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7578.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL7_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 6.530e-63
Identity = 92/116 (79.31%), Postives = 108/116 (93.10%), Query Frame = 1
Query:    1 APEFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVPNRFAPGQQPIQGAVGKQPMTQEDMMQVFRKASRLGTEETKFYLESSGWDLAKALAEWRAEVRWEAEQ 348
            APEFLEHV+LPDDTL GICLKYKVKDRELR+LNGFVGDHFRMCD L+VPNRF+PGQQPIQGA GK+P+++ D MQ+FRK S+LG EE++FYLES+GW+L+KALA+WRAE RWEAEQ
Sbjct:   83 APEFLEHVVLPDDTLVGICLKYKVKDRELRRLNGFVGDHFRMCDVLIVPNRFSPGQQPIQGASGKEPISRNDTMQLFRKDSQLGAEESRFYLESNGWELSKALAQWRAENRWEAEQ 198          
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLF6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.910e-27
Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1
Query:    4 PEFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVPNRFAPGQQPIQGAVGKQPMTQEDMMQVFRKASRLGTEETKFYLESSGWDLAKALAEWRAEVRWEA 342
            P FLEHVI+P+DTL GICL+Y+V  +EL   N F G+HFR+C  L +PN+F      ++     QP ++E  +Q FR  S LG +E  FYLE++ W LA AL ++R +  WE+
Sbjct:   72 PAFLEHVIMPEDTLVGICLRYRVSKKELHHYNDFFGEHFRLCKVLRIPNKFTD----VEAVAQLQPRSREVDLQRFRYESGLGMKEAAFYLETNDWSLALALLQFRGDTEWES 180          
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWB6_HETAK)

HSP 1 Score: 100 bits (249), Expect = 3.800e-24
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    4 PEFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVPNRFAPGQQPIQ--GAVGKQPMTQEDMMQVFRKASRLGTEETKFYLESSGWDLAKALAEWRAEVRWEAEQ 348
            P FLEH+ILP DTL GICL+++ K  ELR+LN F GD+FR+C  L++P +     + +Q    V K        +Q F   SRLG +E ++YL ++GWDLA AL   R +  WE  Q
Sbjct:   87 PTFLEHIILPSDTLTGICLRHRCKPAELRRLNNFFGDNFRLCQKLIIPVKEGVNLEQLQQHSEVAK--------VQAFCNESRLGPQEARYYLGAAGWDLASALRAARDDRLWETAQ 195          
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9K6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.150e-19
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 APEFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVP--NRFAPGQQPIQGAVGKQPMTQEDMMQVFRKASRLGTEETKFYLESSGWDLAKALAEWRAEVRWEAEQ 348
            +P+F+EHVI+P+DTL GICL+YK     LR+ N F G+ FR+C +L +P  ++     +P       Q MT+E  MQ+    + L   E K YL+   WD+A A+   + ++ WEAEQ
Sbjct:   77 SPDFIEHVIMPEDTLVGICLRYKASKAVLRRHNDFFGEQFRLCRTLRIPVNDKNIVDLRP-------QAMTKEVKMQITMNRTGLADVEAKIYLDDHNWDVATAVRHAKEDLDWEAEQ 187          
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8A5I8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.440e-14
Identity = 42/112 (37.50%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    7 EFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVPNRFAPGQQPIQGAVGKQPMTQEDMMQVFRKASR-LGTEETKFYLESSGWDLAKALAEWRAEVRWE 339
            +F+EHV+LP DTLAGICL+YK+K  +LR+ N FVG++ R  + L +P             + KQ  +++  +Q  + A++ LG  E +FYL+ +  D+ KA+A+ R++  +E
Sbjct:   69 DFIEHVVLPSDTLAGICLRYKIKKYDLRRHNFFVGENIRSVEILKIPLNKGK-------TIKKQKESRQVKLQKIKNATKGLGAIEAEFYLDEADGDVVKAIAKARSDDAFE 173          
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Match: LysM (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQP3_9ARCH)

HSP 1 Score: 71.2 bits (173), Expect = 1.120e-12
Identity = 36/113 (31.86%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    4 PEFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVPNRFAPGQQPIQGAVGKQPM--TQEDMMQVFRKASRLGTEETKFYLESSGWDLAKALAEWRAEVRW 336
            P  +EH+++P+DTL G+CL+Y V   ++R++N F G + +   SL +P         IQ     +P   T E  +Q F+ A+    +E   YLE   +D+ KA++ W+ +  W
Sbjct:   64 PSVIEHIVMPEDTLPGLCLRYSVTATDIRRMNIFSGSNIQFKKSLRIP---------IQSGAYIEPQLDTVEVKVQKFKNATGESNKEAHLYLEEHNYDVDKAISAWKGDENW 167          
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Match: LysM (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHM5_AURAN)

HSP 1 Score: 64.7 bits (156), Expect = 1.000e-9
Identity = 41/109 (37.61%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    1 APEFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVPNRFAPGQQPIQGAVGKQPMTQEDMMQVFRKASRLGTEETKFYLESSGWDLAKALAEWRAE 327
            A E  EHV++P DTLAG+CLKY V  R LR LN   GD+ +    L +P   A    P+Q        T++ + +  R A+RL  E+    LE+  WD    +A   AE
Sbjct:   27 AGEAREHVVVPGDTLAGLCLKYAVSARALRTLNKLDGDNVQGVAVLAIPPSPAGRPAPVQA------QTRDVVARRLRAATRLPLEDCVARLEARDWDFGACVAAHEAE 129          
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Match: Hypothetical (protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VMI9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.020e-9
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = 1
Query:    4 PEFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVPNRFAPGQQPIQGAVGKQPMTQEDMMQVFRKASRLGTEETKF--YLESSGWDLAKALAEWRAEVRWEAEQ 348
            P  ++H+ILP DTLAGICLKYK+   ++R++N F G +  +  + L+     P Q  + G +  Q     +  +   +A  L   + +   YLE + WDL  A+   + ++ WE  Q
Sbjct:  147 PTHIQHIILPTDTLAGICLKYKISAVKVRQINRFSGSNLHLAPNPLIIPIVDP-QLLVDGVIKVQNTESREFKRGAFRARFLSLRDGEITSYLEMNNWDLEAAMQNAKDDIAWEKSQ 262          
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C639_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.630e-9
Identity = 39/126 (30.95%), Postives = 64/126 (50.79%), Query Frame = 1
Query:    7 EFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVPNRFAPGQQPIQGAVGKQPMTQEDMMQVFRKASRLG------------TEETKFYLESSGWDLAKALAEWRAEVRWEAEQ 348
            ++LEHV+LP DTL G+CL+YKVK   LR+ N F G+   +    L+         P  G +    + Q+   ++F+  S L              +E + YL+ + W++ +A+ E  AE+ WE +Q
Sbjct:  119 KYLEHVVLPSDTLQGLCLRYKVKPVVLRQANMFSGNTLFLAPKKLLI--------PCSGNIDISKVRQDTTSELFKAHSFLSQVNGLRRFTGFSNKEARVYLDLNDWNVDEAVKEALAEIDWEGDQ 236          
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWZ4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.670e-9
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 1
Query:    4 PEFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVPNRFAPGQQPIQGAVGKQPMTQEDMMQVFRKASRLGTEETKFYLESSGWD 294
            P  +EH ++PDDTL GICL+Y+    E+R++N F G++     +L +P     GQ      +  Q  T + ++Q FR  +     E++ YLE + W+
Sbjct:   69 PIIIEHTVMPDDTLQGICLRYRASVMEIRRMNLFSGNNIHCKKTLRIP--LTKGQ-----IITGQENTNDVILQKFRNETSESLAESRVYLEDNNWE 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7578.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
Uncharacterized6.530e-6379.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.910e-2746.02protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical3.800e-2444.44protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical1.150e-1939.83protein n=2 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical3.440e-1437.50protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
LysM1.120e-1231.86domain-containing protein n=1 Tax=archaeon TaxID=1... [more]
LysM1.000e-937.61domain-containing protein n=1 Tax=Aureococcus anop... [more]
Hypothetical1.020e-931.62protein n=5 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.630e-930.95protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Hypothetical1.670e-932.99protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7578contigH-canaliculatus_M_contigs7578:10..1730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44689.DDB0192068
PFAMsPH
Model size348
Max annot lvl554915|Amoebozoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.06e-10
EggNOG OGs2CPBT@1|root,2R17U@2759|Eukaryota,3XBA5@554915|Amoebozoa
Ec32 ortholog descriptionLysM domain
Ec32 orthologEc-19_000570.1
DescriptionPleckstrin homology domain.
Cds size348
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854095.087161-CDS-H-canaliculatus_M_contigs7578:9..781696854095.087161-CDS-H-canaliculatus_M_contigs7578:9..78Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7578 10..78 +
1696854095.1007109-CDS-H-canaliculatus_M_contigs7578:809..9111696854095.1007109-CDS-H-canaliculatus_M_contigs7578:809..911Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7578 810..911 +
1696854095.119091-CDS-H-canaliculatus_M_contigs7578:1553..17301696854095.119091-CDS-H-canaliculatus_M_contigs7578:1553..1730Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7578 1554..1730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7578.1.1prot_H-canaliculatus_M_contigs7578.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7578 10..1730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7578.1.1

>prot_H-canaliculatus_M_contigs7578.1.1 ID=prot_H-canaliculatus_M_contigs7578.1.1|Name=mRNA_H-canaliculatus_M_contigs7578.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=116bp
APEFLEHVILPDDTLAGICLKYKVKDRELRKLNGFVGDHFRMCDSLLVPN
RFAPGQQPIQGAVGKQPMTQEDMMQVFRKASRLGTEETKFYLESSGWDLA
KALAEWRAEVRWEAEQ
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mRNA from alignment at H-canaliculatus_M_contigs7578:10..1730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7578.1.1 ID=mRNA_H-canaliculatus_M_contigs7578.1.1|Name=mRNA_H-canaliculatus_M_contigs7578.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1721bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7578:10..1730+ (Hapterophycus canaliculatus Oshoro7m male)
GCCCCAGAGTTTTTGGAGCACGTGATACTGCCTGACGACACGCTGGCGGG CATCTGCCTCAAGTACAAGGTGTGATCCATCCGCCGAGGCACGATAGCAG CATCGAAGAAAATCACGACATAACGATGTCCATCCGCTGTTCTTGTTGTT GTGGTTGTTGGCGTTTGCGTCCGTGTTGCAGCTGCTGTTGTTGTTCATCT TGTTGGTTGTGTTCGCTTGGGTGGAGCAACAAGATGACGACACCTGAACG AAGCACCGCGTTAACCCGAAACACGGGACAATGCCTCCCCCCACTTCGTT TCGAGCATAAAAAACCAACAAAATGTCGGGGCAACAACTGTTCGTTTGCC CCAAGTCCACCTGTAGATTTAGTTCATGACGACCCTGGCGCGAAAATGTT TGGTGGTTAGGATCATCACGCTTACGAAGTAAATCGAGGCCATCGAAGAG ACCATCGAAGAGACCACTGCAAGCGAAAGAGCGACGACGTCCGTCGTCAG GGGTCTTCACGCCAGCGCCTCGCGACTGACCGCGGGTCCCACCATCCCCG CCTTCGCTCCGCCGGACGTTTGGCGCGGCGTAAGACCGACGACGTGGTGG CGTCTAACATATCCATCCGCTTCGTGCGTCTCGCTACGTCGATGCCTTGA TTGCGAGCAATCGACCCACTTCGAGCTTTGCAGCGAAGCTTCGAGGACGA AGATGAACCTCCGCGTCCGACCCTTGTGGATATCGGCTTCGAGCAGTCTT AACTCTTAACCATGCCTTCCCTCTGCGGACTTGCTTGCTCCGACTCGAAG GTAAAGGACCGTGAGCTTCGGAAGCTCAATGGCTTCGTGGGAGACCATTT CCGCATGTGCGACTCCCTCCTCGTCCCGAACAGATTTGCCCCCGGACAAC AGGTACGCATTGCCGAACTTGCCGACGTTTGTCCAATCGGTGGTGGTGGC GGCGTTTGTGTCGCTCTTGATTTTGACTTCGATGTTTGTGTTTTTCCCGC CGGTGGTGCTACCAAAGATGTTCCTCGTGCCCACATCTTGATGGCGAAGC TGTCGCTCGCGGTGGAAGCGGACGTGCTGATGGTGTGGTGTTGCTTGCTC TCATCTCGTCCTTGAGACGAACCATATCAGCCCTTGCCCGTTGTCTCCGC AGCAGCGAATACGTCCCAGCGGAATATTAGAAGAGGAGGAGAAGTCTAGT ACGGAAGCACCGGTTACGAGACTACGACAGAAATGACGGTAGCAGAGCAC GCATGAGCCTTATGACGTGTGCTCCCATTTGGAACATGCTGCAGCCATGC AGCAAGGAAGCAGCGTCGAACGACCTGAGGCAAGCGGCCAGCCCAGGCAG AAGTGCCGCCTGTACGCCGCGTAAACTAGAAGCTGCAGCGCCTCCGGGAC TCGCCCGGCCGTAACGCCTCAAAGCAACACGACCGCATGGGTGAAAAGAT CCGGAAACGCAAGCAACACTCTCTCCAACGCTGGCGGGAGTGCTGTTCCG AACGTCCTCGCCGACCCTTGCCCCCTGCCCCCAACAAAAAACAGCCAATC CAGGGGGCGGTGGGCAAGCAGCCCATGACGCAAGAGGATATGATGCAGGT TTTTCGAAAAGCATCGAGGTTAGGCACGGAGGAAACCAAGTTTTACCTGG AGAGCAGCGGGTGGGATCTCGCAAAGGCGTTGGCGGAATGGCGGGCGGAA GTCCGGTGGGAGGCCGAGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7578:10..1730+

>mRNA_H-canaliculatus_M_contigs7578.1.1 ID=mRNA_H-canaliculatus_M_contigs7578.1.1|Name=mRNA_H-canaliculatus_M_contigs7578.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7578:10..1730+ (Hapterophycus canaliculatus Oshoro7m male)
GCCCCAGAGTTTTTGGAGCACGTGATACTGCCTGACGACACGCTGGCGGG
CATCTGCCTCAAGTACAAGGTAAAGGACCGTGAGCTTCGGAAGCTCAATG
GCTTCGTGGGAGACCATTTCCGCATGTGCGACTCCCTCCTCGTCCCGAAC
AGATTTGCCCCCGGACAACAGCCAATCCAGGGGGCGGTGGGCAAGCAGCC
CATGACGCAAGAGGATATGATGCAGGTTTTTCGAAAAGCATCGAGGTTAG
GCACGGAGGAAACCAAGTTTTACCTGGAGAGCAGCGGGTGGGATCTCGCA
AAGGCGTTGGCGGAATGGCGGGCGGAAGTCCGGTGGGAGGCCGAGCAG
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