mRNA_H-canaliculatus_M_contigs7576.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7576.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7576.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Match: TYR (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI9_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.240e-46
Identity = 69/104 (66.35%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 MRTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLYGYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWSKQATAYA 312
            +RTP RGRFGY+P M+DATE+ST++NSYGML++PWNNDPTPF+TR+DH+ G++NH KP+GCRKYR A  Q +WM LT++    AHG+IH+LLGG WS +ATAYA
Sbjct:  420 LRTPARGRFGYIPNMIDATEFSTVRNSYGMLQAPWNNDPTPFLTRNDHMMGFVNHRKPSGCRKYRDAIMQTSWMALTESFNDGAHGEIHELLGGAWSLEATAYA 523          
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Match: Hypothetical (tyrosinase-like protein F21C3.2 in chromosome I, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K2_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 3.720e-46
Identity = 67/104 (64.42%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 MRTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLYGYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWSKQATAYA 312
            +RTP RGRFGY+P M++ATE+ST++NSYG+L++PWNNDPTPF+TRSDHL G++NH KP+GCR+YR A  Q +WM LT++    AHG+IH+LLGG WS +ATAY+
Sbjct:  227 LRTPARGRFGYIPNMINATEFSTVRNSYGILQAPWNNDPTPFLTRSDHLMGFVNHRKPSGCRRYREAIMQTSWMALTESFNDGAHGEIHELLGGAWSSEATAYS 330          
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Match: Putative (scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN5_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 2.030e-37
Identity = 60/103 (58.25%), Postives = 78/103 (75.73%), Query Frame = 1
Query:    1 MRTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLYGYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWSKQATAY 309
            + TP RGRFG+VP M +ATEYSTL N YG+LRSPWN  P PF+TR D L+GY N+ KP+GC++YR A R+ TWM+LT+++   AHG IH+LLGG WS   + +
Sbjct:  231 LMTPSRGRFGFVPVMANATEYSTLHNPYGLLRSPWNTHPEPFLTRHDRLFGYKNNRKPSGCKQYRDAARKDTWMLLTESMNAGAHGHIHELLGGAWSSDWSGF 333          
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Match: Tyrosinase_Cu-bd (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F0_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.430e-34
Identity = 60/103 (58.25%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    4 RTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLYGYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWSKQATAYA 312
            RT  +GRF YVP M DA EYS   NSYG+LRS WNND  PF+TR DH  G +N+ KP+GCR+YR A     WM LT+     AHG IH LLGGTWS +A  YA
Sbjct:  205 RTLTQGRFAYVPVMTDAREYSAQYNSYGLLRSAWNNDRNPFLTRHDHQLGMMNNKKPSGCRRYRDAYVAEDWMKLTEAFNGGAHGNIHGLLGGTWSPEADEYA 307          
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Match: Putative (scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY9_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.900e-34
Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    4 RTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLYGYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWSKQATAYA 312
            RTP +GRF YVP M DA EYS   NSYG+LRS WNND  P++TR DH  G +N+ KP+GCR+YR A     WM LT+     AHG IH LLGGTWS +A  YA
Sbjct:  335 RTPTQGRFAYVPVMTDAREYSAQYNSYGLLRSAWNNDRNPYLTRHDHQLGMMNNKKPSGCRRYRDAYVAEDWMKLTEAFNGGAHGNIHGLLGGTWSPEADEYA 437          
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Match: Tyrosinase-like (protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR4_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.380e-33
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 1
Query:    1 MRTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLYGYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWS 291
            + TP +GRFGYVP M DA E+S + NSYG+LRSPWNNDP+PFMTRS  +YG+ N+ KP+GC +Y  A R + WM  +  L  AAHG IH+ +GG+W+
Sbjct:  320 LHTPTKGRFGYVPAMADAKEFSKVYNSYGVLRSPWNNDPSPFMTRSSMIYGFFNNLKPSGCFEYSHALRHQDWMSFSMVLNAAAHGHIHETVGGSWN 416          
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Match: TYR (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC5_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.050e-32
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    4 RTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLYGYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWSKQATAYA 312
            RT  +GRF YVP M +A EYS   NSYG+LRS WNND  PF+TR DH  G +N+ KP+GCR+YR A     WM LT+     AHG IH LLGGTWS +A  YA
Sbjct:  406 RTLTQGRFAYVPVMTNAREYSAQYNSYGLLRSAWNNDRNPFLTRHDHQLGMMNNKKPSGCRRYRDAYVADDWMKLTEAFNGGAHGNIHGLLGGTWSPEADEYA 508          
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Match: Tyrosinase-like (protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM9_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 4.120e-32
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    4 RTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLYGYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWSKQATAYA 312
            R P RGRFG+VP M +A+EYS + N+YGMLRS WN+D TPFMTR D L+ Y N+ KP GCR+YR A     WM L+  LG +AHG IH+++GG WS +A   A
Sbjct:  320 RVPDRGRFGFVPVMTNASEYSRITNAYGMLRSVWNSDSTPFMTRYDGLFEYYNNRKPAGCRQYRDALDHDDWMSLSAALGTSAHGHIHEIVGGAWSMEAGVVA 422          
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Match: Tyrosinase_Cu-bd (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L614_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 4.420e-31
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    1 MRTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLYGYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWS 291
            + TP +GRF Y P M +A E+S++ NSYG+LRSPWNNDP+PFMTRS  +YG+ N+ KP+GC +Y  A   + WM  +  L  AAHG IH+ +GG+W+
Sbjct:  209 LHTPTKGRFAYAPAMANAKEFSSIYNSYGVLRSPWNNDPSPFMTRSSMIYGFFNNLKPSGCFEYSHALVNQDWMSFSKVLNAAAHGHIHETMGGSWN 305          
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Match: TYR (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.970e-31
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    4 RTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLYGYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWSKQATAYA 312
            R P RGRFG+VP   + TEYS + N+YGMLRS WN+D TPFMTR D L+GY N+ KP GC++YR A     WM L+  L  +AHG IH+++GG WS +A   A
Sbjct:  179 RVPDRGRFGFVPVATNVTEYSRIFNAYGMLRSEWNSDSTPFMTRYDGLFGYQNNRKPAGCKQYRDAFDHDDWMSLSSALKSSAHGHIHEIVGGAWSMEAGVVA 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7576.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
TYR2.240e-4666.35protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical3.720e-4664.42tyrosinase-like protein F21C3.2 in chromosome I, p... [more]
Putative2.030e-3758.25scytonemin-related tyrosinase n=1 Tax=Ectocarpus s... [more]
Tyrosinase_Cu-bd1.430e-3458.25domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Putative2.900e-3458.25scytonemin-related tyrosinase n=1 Tax=Ectocarpus s... [more]
Tyrosinase-like5.380e-3356.70protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
TYR3.050e-3257.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Tyrosinase-like4.120e-3256.31protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Tyrosinase_Cu-bd4.420e-3152.58domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
TYR4.970e-3154.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7576contigH-canaliculatus_M_contigs7576:370..1258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNR4
PFAMsTyrosinase
Model size312
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.82e-34
EggNOG OGs2CZRH@1|root,2SBDH@2759|Eukaryota
DescriptionCommon central domain of tyrosinase
Cds size312
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854094.8208559-CDS-H-canaliculatus_M_contigs7576:369..5871696854094.8208559-CDS-H-canaliculatus_M_contigs7576:369..587Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7576 370..587 +
1696854094.832499-CDS-H-canaliculatus_M_contigs7576:1164..12581696854094.832499-CDS-H-canaliculatus_M_contigs7576:1164..1258Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7576 1165..1258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7576.1.1prot_H-canaliculatus_M_contigs7576.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7576 370..1258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7576.1.1

>prot_H-canaliculatus_M_contigs7576.1.1 ID=prot_H-canaliculatus_M_contigs7576.1.1|Name=mRNA_H-canaliculatus_M_contigs7576.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=104bp
MRTPVRGRFGYVPTMLDATEYSTLQNSYGMLRSPWNNDPTPFMTRSDHLY
GYINHGKPNGCRKYRAAKRQRTWMMLTDTLGHAAHGQIHDLLGGTWSKQA
TAYA
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mRNA from alignment at H-canaliculatus_M_contigs7576:370..1258+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7576.1.1 ID=mRNA_H-canaliculatus_M_contigs7576.1.1|Name=mRNA_H-canaliculatus_M_contigs7576.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=889bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7576:370..1258+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGTACACCGGTGCGGGGGCGCTTCGGCTACGTGCCCACCATGCTGGA CGCCACCGAGTATTCGACGCTGCAAAACTCCTACGGCATGCTCCGGTCAC CGTGGAACAACGATCCAACCCCTTTCATGACCCGCAGCGACCATCTGTAC GGCTACATTAATCATGGAAAACCAAACGGGTGCCGGAAGTATCGGGCTGC CAAAAGACAACGGACCTGGTACGATTGCGGTGTTGCCAACGTTAGTGGTA GGGTGAAGTGTTCTGCTGTTCCAGCTAATGCGGTTCTTGTTCGTGCTGTT GTTGTTGTTTTTGTTGCTGCTGCTGTTACTGTTGATCTTGAAAAGAAGAG TTGACAACACCGAAGGAATACCTCCCGAGCTGAGTTTCAGCTGTGTCTTT CATCTTATTTTTCTTCCTCTCACCCTCCCCATCCTCCTCCTCCTCCTCCT CCTACGTCTTGGTCTTGTTCGTTCATGGGGTAATACTTCGTCGTCCTCTT TACTTCTTGTTCTCTCCCCAAGCGCATTGTCAGGGCTGTGGTAACGATCC AGCTGATGCCGTCGTTCGTTTCCCTCGCCGAAAAGCCATAAGCGTACAAT CGTTTTTGCCGGGACTCGGCTGGACTGGCACAAACGGATCCTGCCACAGT ACGACTACACAACTGGTCGGGTTTCCTTCTTTTCGGGGGTGACCGCAGAT TCGAGCTTGTTCACAGGACGAAGCACCTCCACTTCCCCCGTGGGCCGAAC ACGACAACTGATGCCTCTCGACGACCGACTCCCCTCGCGATCCAGGATGA TGTTGACGGATACCCTTGGCCATGCGGCCCACGGACAGATCCACGACCTG CTCGGCGGCACTTGGTCCAAACAGGCCACCGCGTATGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7576:370..1258+

>mRNA_H-canaliculatus_M_contigs7576.1.1 ID=mRNA_H-canaliculatus_M_contigs7576.1.1|Name=mRNA_H-canaliculatus_M_contigs7576.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=312bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7576:370..1258+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGTACACCGGTGCGGGGGCGCTTCGGCTACGTGCCCACCATGCTGGA
CGCCACCGAGTATTCGACGCTGCAAAACTCCTACGGCATGCTCCGGTCAC
CGTGGAACAACGATCCAACCCCTTTCATGACCCGCAGCGACCATCTGTAC
GGCTACATTAATCATGGAAAACCAAACGGGTGCCGGAAGTATCGGGCTGC
CAAAAGACAACGGACCTGGATGATGTTGACGGATACCCTTGGCCATGCGG
CCCACGGACAGATCCACGACCTGCTCGGCGGCACTTGGTCCAAACAGGCC
ACCGCGTATGCG
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