mRNA_H-canaliculatus_M_contigs75741.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75741.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75741.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75741.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.850e-13
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 QYDVVEMRAILSCLPAKFEADGDGKKAAWRAGFFQRVQSLVAQ 129
            +YD+VEMRAIL+CLPAKFE D DG+KAAWRA F QR + LVAQ
Sbjct:  561 KYDLVEMRAILACLPAKFEVDDDGRKAAWRAEFVQRAKGLVAQ 603
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BLAST of mRNA_H-canaliculatus_M_contigs75741.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN4_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.440e-13
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 QYDVVEMRAILSCLPAKFEADGDGKKAAWRAGFFQRVQSLVAQ 129
            +YD+VE+RAI++CLPAKFE D DG+KAAWR  F QR QSLVAQ
Sbjct: 1098 KYDLVELRAIMACLPAKFEVDADGRKAAWRELFLQRAQSLVAQ 1140
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BLAST of mRNA_H-canaliculatus_M_contigs75741.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC3_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.640e-12
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QYDVVEMRAILSCLPAKFEADGDGKKAAWRAGFFQRVQSLVAQ 129
            +YD+VEMRAIL+CLP KFE D DG+KAAWRA F QR + L+AQ
Sbjct:  619 KYDLVEMRAILACLPDKFEVDDDGRKAAWRAEFVQRAKGLIAQ 661
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BLAST of mRNA_H-canaliculatus_M_contigs75741.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT01_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.640e-12
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 QYDVVEMRAILSCLPAKFEADGDGKKAAWRAGFFQRVQSLVAQ 129
            +YD+VEMRA+++CLPAKFE D DG+K AWRA F QR + LVAQ
Sbjct:  545 KYDLVEMRAVMACLPAKFEVDDDGRKTAWRAEFVQRAKGLVAQ 587
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75741.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.850e-1374.42protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.440e-1372.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.640e-1269.77protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.640e-1267.44protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT01... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75741contigH-canaliculatus_M_contigs75741:74..202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FTS2
Model size129
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.14e-11
EggNOG OGs2C7IG@1|root,2QWI0@2759|Eukaryota
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854094.7413065-CDS-H-canaliculatus_M_contigs75741:73..1841696854094.7413065-CDS-H-canaliculatus_M_contigs75741:73..184Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75741 74..184 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854094.7527976-UTR-H-canaliculatus_M_contigs75741:184..2021696854094.7527976-UTR-H-canaliculatus_M_contigs75741:184..202Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75741 185..202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75741.1.1prot_H-canaliculatus_M_contigs75741.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75741 74..184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75741.1.1

>prot_H-canaliculatus_M_contigs75741.1.1 ID=prot_H-canaliculatus_M_contigs75741.1.1|Name=mRNA_H-canaliculatus_M_contigs75741.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=37bp
MRAILSCLPAKFEADGDGKKAAWRAGFFQRVQSLVAQ
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mRNA from alignment at H-canaliculatus_M_contigs75741:74..202-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75741.1.1 ID=mRNA_H-canaliculatus_M_contigs75741.1.1|Name=mRNA_H-canaliculatus_M_contigs75741.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=129bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75741:74..202- (Hapterophycus canaliculatus Oshoro7m male)
CAGTACGACGTCGTGGAGATGAGAGCGATCCTGTCTTGCCTTCCGGCCAA
GTTCGAGGCCGACGGGGACGGCAAGAAGGCTGCCTGGAGGGCTGGCTTCT
TCCAGAGGGTGCAGAGCCTCGTGGCACAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75741:74..202-

>mRNA_H-canaliculatus_M_contigs75741.1.1 ID=mRNA_H-canaliculatus_M_contigs75741.1.1|Name=mRNA_H-canaliculatus_M_contigs75741.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=111bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75741:74..202- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGAGCGATCCTGTCTTGCCTTCCGGCCAAGTTCGAGGCCGACGGGGA
CGGCAAGAAGGCTGCCTGGAGGGCTGGCTTCTTCCAGAGGGTGCAGAGCC
TCGTGGCACAG
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