mRNA_H-canaliculatus_M_contigs7574.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Match: Ribosomal_L12 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K0_9PHAE) HSP 1 Score: 241 bits (615), Expect = 2.860e-75 Identity = 173/297 (58.25%), Postives = 193/297 (64.98%), Query Frame = 1
Query: 7 TKASAVCRRGLAIAGRRCRTAAPVA-WPLVQRGLDARSEQAA-WPSPARAYSRSAGTVAGVTPPPADAADXXXXXXGAAVSVSLRPFLRGAATGNRNSGRXXXXXXLQASRALSTSVDAGDASTEDAGAPAGAGADGERAGDGNGADSQEGDAGESEAASPQEENPLEGLVQDDGDPGPPPPLDPSIVTEPSPKVLEVMESIDALNFAEIAMLIDVFKNKLGLDELPTLSTGGSDGEPEGGGDG-GAPAADAKKTIFKVKVTGFGDKAKIKVIKEVRVVTGLGLREAKEMVENLPQV 888
T A+++CR GLA GRRCRT AP A WPLVQRGLD S+ A PS +R TV TPP AA G + L P R A GN N GR ST+ A DA+TED P A AD +G+ EAAS +ENPL G+V DDGDPGPPPPLDPSIVTEPSPKVLEVM SI++LNF E+AMLID+FKNKLGLDELPTLS GG+DG APAA A+KTIFKVKVTGFGDKAKIKVIKEVRV+TGLGLREAKEMVE+LPQV
Sbjct: 2 TLATSMCR-GLASGGRRCRTPAPAAAWPLVQRGLDVSSKHTAVGPS----STRGCATVVAATPPAVAAA----AARGRVLQAGLPPVYRPDA-GNGNGGRVR----------FSTTAGA-DAATEDTSGPPAAKADXXXXXX----XXXXXXSGDGEAASTVDENPLGGMVDDDGDPGPPPPLDPSIVTEPSPKVLEVMASIESLNFVEMAMLIDLFKNKLGLDELPTLSFGGADGGXXXXXXXEDAPAAAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQV 273
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Citrus TaxID=2706 RepID=V4SP36_CITCL) HSP 1 Score: 82.8 bits (203), Expect = 1.800e-15 Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 568 EPSPKVLEVMESIDALNFAEIAMLIDVFKNKLGLDELPTLST-----GGS-DGEPEGGGDGGAPAAD-AKKTIFKVKVTGFGDKAKIKVIKEVRVVTGLGLREAKEMVENLP 882
EPS KV +++ I L+ E+ L DV +NKLG+ E+P + G S G GG G A + +KT+F +K+ G+G +AK+KVIKEVR TGLGL+E+KE+VE +P
Sbjct: 45 EPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVP 156
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5NSD1_CITUN) HSP 1 Score: 82.8 bits (203), Expect = 9.590e-15 Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 568 EPSPKVLEVMESIDALNFAEIAMLIDVFKNKLGLDELPTLST-----GGS-DGEPEGGGDGGAPAAD-AKKTIFKVKVTGFGDKAKIKVIKEVRVVTGLGLREAKEMVENLP 882
EPS KV +++ I L+ E+ L DV +NKLG+ E+P + G S G GG G A + +KT+F +K+ G+G +AK+KVIKEVR TGLGL+E+KE+VE +P
Sbjct: 43 EPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLEGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVP 154
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Match: Putative (ribosomal protein L7/L12 n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6P5U3_ROSCH) HSP 1 Score: 80.1 bits (196), Expect = 2.090e-14 Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 571 PSPKVLEVMESIDALNFAEIAMLIDVFKNKLGLDELPTLSTGGSDGEPEGGGDGGAPAADAK--KTIFKVKVTGFGDKAKIKVIKEVRVVTGLGLREAKEMVENLPQV 888
PS K++++ E I AL AE L KL L +L +ST G D P+GG GG+ A + K KT F VK+ F AKIKVIKEVR T LGL+EAKE+VE P V
Sbjct: 59 PSDKIVQLAERIAALAPAERCQLGPALVEKLKLPQLQPISTEGMDLGPQGGAAGGSKAEEKKVEKTAFDVKLEKFEASAKIKVIKEVRAFTSLGLKEAKELVEKAPCV 166
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Match: Uncharacterized (protein n=4 Tax=Fagaceae TaxID=3503 RepID=A0A7N2MP95_QUELO) HSP 1 Score: 79.7 bits (195), Expect = 2.890e-14 Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 571 PSPKVLEVMESIDALNFAEIAMLIDVFKNKLGLDELPTLST---GGSDGEPEGGGDGGAPAAD--AKKTIFKVKVTGFGDKAKIKVIKEVRVVTGLGLREAKEMVENLP 882
PS +V +++ + L E++ L++V ++KLG+ E+PT+ G G +G G G A + A+KT+F VK+ GF AKIKVIKEVR T LGL+EAK++VE P
Sbjct: 56 PSEQVSAIVDELSGLTLLEVSDLVEVLRDKLGITEMPTMMVMMPGMVPGGLKGKGGGAAKKVEEKAEKTVFDVKLEGFDAAAKIKVIKEVRTFTDLGLKEAKDLVEKSP 164
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PFH1_CANSA) HSP 1 Score: 79.3 bits (194), Expect = 3.320e-14 Identity = 51/116 (43.97%), Postives = 68/116 (58.62%), Query Frame = 1
Query: 562 VTEPSP-KVLEVMESIDALNFAEIAMLIDVFKNKLGLDELPTL---STGGSDGEPEGGGDGGAPAADAK-----KTIFKVKVTGFGDKAKIKVIKEVRVVTGLGLREAKEMVENLP 882
+++P+P +V + E I L E+ L +V + KLG+ E+PT+ G G+ G G GGA AA + KT F VK+ GF KIKVIKEVR T LGL+EAKE+VE P
Sbjct: 40 LSQPTPERVSAIAEEISGLTLLEVTDLTEVLREKLGVKEMPTMVMMMPGMGFGDLRGAGKGGAGAAKGEEKKVEKTAFDVKLDGFDAATKIKVIKEVRTFTALGLKEAKELVEKAP 155
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q449_9EUKA) HSP 1 Score: 79.7 bits (195), Expect = 3.980e-14 Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 1
Query: 556 SIVTEPSPKVLEVMESIDALNFAEIAMLIDVFKNKLGLDE---LPTLSTGGSDGEPEGGGDGGAPAADA---KKTIFKVKVTGFGDKAKIKVIKEVRVVTGLGLREAKEMVENLPQ 885
S EPSPKV E+++ I AL E A L D K +LG+ +P + G P G APA + +KT F V++ F +KIKVIKEVR +TGLGL+EAKE+VEN P+
Sbjct: 67 SPAAEPSPKVQELVDQISALTLLEAAQLTDALKERLGISSAMMMPAAPMAAAAG-PGPGLASAAPAEEEVVPEKTAFSVRLEKFDAASKIKVIKEVRSITGLGLKEAKELVENAPK 181
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0R0FQ94_SOYBN) HSP 1 Score: 79.3 bits (194), Expect = 4.090e-14 Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 574 SPKVLEVMESIDALNFAEIAMLIDVFKNKLGLDELPTL-----STGGSDGEPEGGGDGGAPAADAK---KTIFKVKVTGFGDKAKIKVIKEVRVVTGLGLREAKEMVENLP 882
S KV +++ + L E+ L++V + K G++ELP G G P GGG G A A+ K KT+F VK+ GF KIKVIKEVR T LGL+EAK++VE +P
Sbjct: 55 SEKVAAIVDELMGLTLLEVMDLVEVMREKRGVNELPIAMLMVPGMGVPRGVPNGGGGGAAGVAEVKAVEKTVFDVKLEGFDAATKIKVIKEVRTFTSLGLKEAKDLVEKVP 165
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Match: Ribosomal_L12 (domain-containing protein n=6 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1MG85_SOYBN) HSP 1 Score: 79.0 bits (193), Expect = 5.430e-14 Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 571 PSPKVLEVMESIDALNFAEIAMLIDVFKNKLGLDELPTLSTGGSDGEPEGGGDGGAPAAD--AKKTIFKVKVTGFGDKAKIKVIKEVRVVTGLGLREAKEMVENLPQV 888
PS K++++ E I+AL+ E ++ +L L +L +ST G D EGGG G + A+KT F VK+ F AKIKVIKEVR T LGL+EAK++VE +P V
Sbjct: 58 PSEKIVQLAEQIEALSEEERGQIMPTLSERLKLPKLQPISTDGMDMGTEGGGAAGLKVEEKKAEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPVV 165
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Match: Uncharacterized (protein n=26 Tax=Poaceae TaxID=4479 RepID=K4AFZ7_SETIT) HSP 1 Score: 78.2 bits (191), Expect = 6.070e-14 Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 556 SIVTEPSPKVLEVMESIDALNFAEIAMLIDVFKNKLGLDELPTLS--TGGSDGEPEGGGDGGAPAADAK----KTIFKVKVTGFGDKAKIKVIKEVRVVTGLGLREAKEMVENLPQV 888
S P+P+V +++ I L E + L D + +LG+DELP L+ TGG+ G GA +AK K F VK+ GF AK+K+IKE+R T LGL+EAKE+VE P V
Sbjct: 24 STAVTPTPRVSGIVDEICGLTLLEASSLADALRGRLGVDELPPLAILTGGAVPLAGGAAGPGAAGEEAKAKEEKMAFDVKLEGFDAAAKLKIIKELRAFTNLGLKEAKELVEKAPAV 140 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7574.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7574.1.1 >prot_H-canaliculatus_M_contigs7574.1.1 ID=prot_H-canaliculatus_M_contigs7574.1.1|Name=mRNA_H-canaliculatus_M_contigs7574.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=296bp MTTKASAVCRRGLAIAGRRCRTAAPVAWPLVQRGLDARSEQAAWPSPARAback to top mRNA from alignment at H-canaliculatus_M_contigs7574:1820..5082+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7574.1.1 ID=mRNA_H-canaliculatus_M_contigs7574.1.1|Name=mRNA_H-canaliculatus_M_contigs7574.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3263bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7574:1820..5082+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7574:1820..5082+ >mRNA_H-canaliculatus_M_contigs7574.1.1 ID=mRNA_H-canaliculatus_M_contigs7574.1.1|Name=mRNA_H-canaliculatus_M_contigs7574.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=888bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7574:1820..5082+ (Hapterophycus canaliculatus Oshoro7m male)back to top |