mRNA_H-canaliculatus_M_contigs75737.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75737.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75737.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75737.1.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.450e-15
Identity = 51/100 (51.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:    1 PLRRPFPFRRQFDGYTAAVPSKHDLASFVRSIHAELALA----------------------------------ADLTLLPLLLKGVVQAARLFCAKAEAM 198
            P+ + FP   QFDGY AAVPSKHDLASF RSIHAEL+LA                                  AD +LLP+LLKGVVQAARLFC K EAM
Sbjct:  659 PVEQMFP---QFDGYMAAVPSKHDLASFFRSIHAELSLAVPAGSVGSAAATGSXXXXXXXXXXXXXXXXXSLEADFSLLPILLKGVVQAARLFCTKVEAM 755
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BLAST of mRNA_H-canaliculatus_M_contigs75737.1.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDX3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 9.220e-9
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   37 DGYTAAVPSKHDLASFVRSIHAELALAAD-----LTLLPLLLKGVVQAARLFCAK 186
            DGY AAVPSKHDLASFV+++ AE A+A D     ++L PL+++G  +A +LFC+K
Sbjct:   32 DGYMAAVPSKHDLASFVKAMQAEAAVATDAVGGHVSLAPLVMRGAAKAVKLFCSK 86
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BLAST of mRNA_H-canaliculatus_M_contigs75737.1.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 5 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2D8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.240e-6
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 PLRRPFPFRRQFDGYTAAVPSKHDLASFVRSIHAELALAAD-LTLLPLLLKGVVQAARLFCAKAEAM 198
            P+ + FP     +GY+ A+PSKHD+ S +R + AELA A D L+L+PL+L+ +V+A R    K E M
Sbjct:  123 PVEQMFP---NVEGYSNAIPSKHDVQSLMRIVDAELARATDELSLMPLILRNLVKAVRFLSTKVEGM 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75737.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Conserved3.450e-1551.00oligomeric Golgi complex subunit 5 n=2 Tax=Ectocar... [more]
Conserved9.220e-954.55oligomeric Golgi complex subunit 5 n=1 Tax=Tribone... [more]
Conserved2.240e-644.78oligomeric Golgi complex subunit 5 n=1 Tax=Dictyoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75737contigH-canaliculatus_M_contigs75737:197..493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSN2
Preferred nameCOG5
PFAMsCOG5
Model size198
Max annot lvl2759|Eukaryota
KEGG koko:K20292
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000212,GO:0000226,GO:0000280,GO:0000910,GO:0000916,GO:0001675,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0006810,GO:0006888,GO:0006891,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0008150,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017119,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030029,GO:0030036,GO:0030154,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032989,GO:0032991,GO:0033206,GO:0033363,GO:0036213,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044837,GO:0046907,GO:0048193,GO:0048219,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061024,GO:0061640,GO:0061982,GO:0061983,GO:0070013,GO:0070925,GO:0070971,GO:0071840,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1903046
Exons2
Evalue5.66e-16
EggNOG OGsKOG2211@1|root,KOG2211@2759|Eukaryota
Descriptionintra-Golgi vesicle-mediated transport
Cds size198
COG categoryJ
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854094.6014788-CDS-H-canaliculatus_M_contigs75737:196..2771696854094.6014788-CDS-H-canaliculatus_M_contigs75737:196..277Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75737 197..277 -
1696854094.6130183-CDS-H-canaliculatus_M_contigs75737:376..4931696854094.6130183-CDS-H-canaliculatus_M_contigs75737:376..493Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75737 377..493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75737.1.1prot_H-canaliculatus_M_contigs75737.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75737 197..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75737.1.1

>prot_H-canaliculatus_M_contigs75737.1.1 ID=prot_H-canaliculatus_M_contigs75737.1.1|Name=mRNA_H-canaliculatus_M_contigs75737.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=66bp
PLRRPFPFRRQFDGYTAAVPSKHDLASFVRSIHAELALAADLTLLPLLLK
GVVQAARLFCAKAEAM
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mRNA from alignment at H-canaliculatus_M_contigs75737:197..493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75737.1.1 ID=mRNA_H-canaliculatus_M_contigs75737.1.1|Name=mRNA_H-canaliculatus_M_contigs75737.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=297bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75737:197..493- (Hapterophycus canaliculatus Oshoro7m male)
CCTCTCCGTCGGCCGTTCCCCTTTCGTCGGCAGTTTGACGGCTACACAGC
GGCGGTGCCTTCCAAGCACGACCTGGCCTCTTTCGTCCGCTCCATCCACG
CAGAACTCGCCCTCGCCGTCCCCGCCGGAAGCAGCGCGCATCGCCAAGGA
GCCTCGGCGACGGGGACGGAGGCCGAGGCGGCCGGCGGCGGCGGCGGGAG
CGGCGGGAGCGCGGAGGCAGATCTTACCCTGCTACCGCTCCTGCTCAAGG
GGGTGGTCCAGGCGGCGAGGCTTTTCTGCGCCAAGGCGGAGGCCATG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75737:197..493-

>mRNA_H-canaliculatus_M_contigs75737.1.1 ID=mRNA_H-canaliculatus_M_contigs75737.1.1|Name=mRNA_H-canaliculatus_M_contigs75737.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75737:197..493- (Hapterophycus canaliculatus Oshoro7m male)
CCTCTCCGTCGGCCGTTCCCCTTTCGTCGGCAGTTTGACGGCTACACAGC
GGCGGTGCCTTCCAAGCACGACCTGGCCTCTTTCGTCCGCTCCATCCACG
CAGAACTCGCCCTCGCCGCAGATCTTACCCTGCTACCGCTCCTGCTCAAG
GGGGTGGTCCAGGCGGCGAGGCTTTTCTGCGCCAAGGCGGAGGCCATG
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