mRNA_H-canaliculatus_M_contigs75721.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75721.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75721.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Match: ABC (transporter (Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F9Z5_9RHOB)

HSP 1 Score: 289 bits (740), Expect = 1.030e-93
Identity = 164/178 (92.13%), Postives = 172/178 (96.63%), Query Frame = 1 
Query:    1 RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDAAKRRIYTRALMTVIVIFLVFAGVVGVLW 534
            RLGERVVADIRKAVFDRVIGMSPSFYE IMTGEVLSRITTDTTLILSVIGSSVSIALRN+LIF+GGL LMMLTSAKLTALVLLIVPAV+IPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHE ISRRQFSDVTE+S+DAAKRRI TRA MT+IVIFL+F GV+GVLW
Sbjct:  109 RLGERVVADIRKAVFDRVIGMSPSFYENIMTGEVLSRITTDTTLILSVIGSSVSIALRNMLIFVGGLVLMMLTSAKLTALVLLIVPAVIIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHEKISRRQFSDVTEQSYDAAKRRIATRAAMTMIVIFLIFTGVLGVLW 286
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BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Match: ABC (transporter transmembrane domain-containing protein n=1 Tax=Roseobacter sp. H9 TaxID=2763262 RepID=UPI001D0A3C45)

HSP 1 Score: 283 bits (725), Expect = 4.630e-90
Identity = 157/178 (88.20%), Postives = 173/178 (97.19%), Query Frame = 1 
Query:    1 RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDAAKRRIYTRALMTVIVIFLVFAGVVGVLW 534
            RLGERVVADIRKA+FDRVIGMSP+FYE++MTGEVLSRITTDTTLILSVIGSSVSIALRN+LIFIGGLALM+LTSAKLT LVLLIVPAV++PILVLGRRLRV+SRENQDWIAASSG+ASEAL+AVQTVQAFTHE  SR+QFSDVTE SFDAA+RR+ TRA+MTVIVIFLVFAG+VGVLW
Sbjct:  104 RLGERVVADIRKAIFDRVIGMSPAFYEKVMTGEVLSRITTDTTLILSVIGSSVSIALRNLLIFIGGLALMLLTSAKLTGLVLLIVPAVIVPILVLGRRLRVLSRENQDWIAASSGNASEALSAVQTVQAFTHEKASRKQFSDVTELSFDAARRRVTTRAVMTVIVIFLVFAGIVGVLW 281
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BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Match: ABC (transporter n=1 Tax=Sulfitobacter sp. JL08 TaxID=2070369 RepID=A0A345R8J4_9RHOB)

HSP 1 Score: 281 bits (719), Expect = 3.650e-89
Identity = 156/178 (87.64%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:    1 RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDAAKRRIYTRALMTVIVIFLVFAGVVGVLW 534
            RLGERVV DIRKAVFDRVIGMSP+FYE+IMTGEVLSRITTDTTLI SVIGSS+SIALRN+LIF+GGLALM+LTSAKLT LVLLIVPAVV+PILVLGRRLRV+SRENQDWIA SSG+ASEALTAVQTVQAFTHE +SRR+FSDVTE+SFDAA+RRI+ RA+MTVIVIFLVF GVVGVLW
Sbjct:  104 RLGERVVVDIRKAVFDRVIGMSPAFYEKIMTGEVLSRITTDTTLIQSVIGSSISIALRNVLIFLGGLALMLLTSAKLTMLVLLIVPAVVVPILVLGRRLRVLSRENQDWIAESSGNASEALTAVQTVQAFTHEDVSRREFSDVTEKSFDAARRRIWVRAVMTVIVIFLVFTGVVGVLW 281
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BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Match: ABC (transporter transmembrane domain-containing protein n=1 Tax=Roseobacter sp. MH60115 TaxID=2785324 RepID=UPI0018A2DFF3)

HSP 1 Score: 281 bits (718), Expect = 5.150e-89
Identity = 157/178 (88.20%), Postives = 170/178 (95.51%), Query Frame = 1 
Query:    1 RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDAAKRRIYTRALMTVIVIFLVFAGVVGVLW 534
            RLGERVVADIRKAVFDRVI MSP+FYEQ+MTGEVLSRITTDTTLILSVIGSSVSIALRN+LIF+GGLALM+LTSAKLT LVLLIVPAV++PILVLGRRLRV+SRENQDWIAASSG+ASE L+AVQTVQAFTHE  SR QFSDVTE S+DAA+RRI TRALMTVIVIFLVFAG+VGVLW
Sbjct:  104 RLGERVVADIRKAVFDRVIAMSPAFYEQVMTGEVLSRITTDTTLILSVIGSSVSIALRNLLIFVGGLALMLLTSAKLTGLVLLIVPAVIVPILVLGRRLRVLSRENQDWIAASSGNASETLSAVQTVQAFTHEAASRTQFSDVTELSYDAARRRISTRALMTVIVIFLVFAGIVGVLW 281
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BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Match: ABC (transporter transmembrane domain-containing protein n=1 Tax=Roseobacter sp. YSTF-M11 TaxID=2859783 RepID=UPI001C5FF4C5)

HSP 1 Score: 280 bits (717), Expect = 7.260e-89
Identity = 156/178 (87.64%), Postives = 170/178 (95.51%), Query Frame = 1 
Query:    1 RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDAAKRRIYTRALMTVIVIFLVFAGVVGVLW 534
            RLGERVV DIRKAVFDRVIGMSPSFYEQ+MTGEVLSRITTDTTLILSVIGSSVSIALRN+LIFIGGL LM+LTSAKLT LVLLIVPAV++PILVLGRRLRV+SRE+QDWIAASSG+ASE L AVQTVQAFTHE  SRRQFS+VTE S+DAAKRR++TRA+MTVIVIFLVFAG+VGVLW
Sbjct:  104 RLGERVVVDIRKAVFDRVIGMSPSFYEQVMTGEVLSRITTDTTLILSVIGSSVSIALRNLLIFIGGLILMLLTSAKLTGLVLLIVPAVIVPILVLGRRLRVLSRESQDWIAASSGNASETLGAVQTVQAFTHEAASRRQFSEVTELSYDAAKRRVFTRAVMTVIVIFLVFAGIVGVLW 281
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BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Match: ATP-binding (cassette domain-containing protein n=1 Tax=Roseobacter ponti TaxID=1891787 RepID=A0A858SPW0_9RHOB)

HSP 1 Score: 277 bits (708), Expect = 1.600e-87
Identity = 154/178 (86.52%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:    1 RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDAAKRRIYTRALMTVIVIFLVFAGVVGVLW 534
            RLGERVV DIRKAVFDRVIGMSP+FYE+IMTGEVLSRITTDTTLILSVIGSSVSIALRNILIF GGL LM+LTSAKLT LVLLIVPAV++PILVLGRRLRV+SRENQDWIAASSG+ASEAL+AVQTVQAFTHE+ SR +F+++TE S+DAA+RRIYTRA+MTVIVIFLVFAG+VGVLW
Sbjct:  104 RLGERVVTDIRKAVFDRVIGMSPAFYEKIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFAGGLVLMLLTSAKLTGLVLLIVPAVIVPILVLGRRLRVLSRENQDWIAASSGNASEALSAVQTVQAFTHESASRGRFAEMTELSYDAARRRIYTRAIMTVIVIFLVFAGIVGVLW 281
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Match: ABC (transporter n=1 Tax=Sulfitobacter sp. SK011 TaxID=1389004 RepID=A0A345QGI1_9RHOB)

HSP 1 Score: 275 bits (704), Expect = 5.890e-87
Identity = 157/178 (88.20%), Postives = 166/178 (93.26%), Query Frame = 1 
Query:    1 RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDAAKRRIYTRALMTVIVIFLVFAGVVGVLW 534
            RLGERVVADIRKAVFDRVIGMSPSFYE+IMTGEVLSRITTDTTLILSVIGSSVSIALRN+LIF+GGL LMMLTS KLT LVLLIVPAVV+PIL LGRRLRVISRENQDWIAASSG+ASE+LTAVQTVQAFTHE  SR QF  +TE SFDAA+RRI TRA MTVIVIFLVF+GVVGVLW
Sbjct:  101 RLGERVVADIRKAVFDRVIGMSPSFYERIMTGEVLSRITTDTTLILSVIGSSVSIALRNMLIFVGGLGLMMLTSTKLTLLVLLIVPAVVVPILTLGRRLRVISRENQDWIAASSGNASESLTAVQTVQAFTHEAASRDQFGQMTEASFDAARRRIKTRAAMTVIVIFLVFSGVVGVLW 278
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BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Match: ATP-binding (cassette subfamily B protein n=7 Tax=Sulfitobacter mediterraneus TaxID=83219 RepID=A0A2T6CCP6_9RHOB)

HSP 1 Score: 275 bits (704), Expect = 6.970e-87
Identity = 157/178 (88.20%), Postives = 167/178 (93.82%), Query Frame = 1 
Query:    1 RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDAAKRRIYTRALMTVIVIFLVFAGVVGVLW 534
            RLGERVVADIRKAVFDRVIGMSP+FYE IMTGEVLSRITTDTTLILSVIGSSVSIALRN+LIF+GGL LM+LTSAKLT LVLLIVPAVVIPIL LGRRLRVISRENQDWIAASSG+ASE+LTAVQTVQAFTHE  SR QF+ +TE SFDAA+RRI TRA MTVIVIFLVF+GVVGVLW
Sbjct:  108 RLGERVVADIRKAVFDRVIGMSPAFYENIMTGEVLSRITTDTTLILSVIGSSVSIALRNVLIFLGGLVLMLLTSAKLTGLVLLIVPAVVIPILTLGRRLRVISRENQDWIAASSGNASESLTAVQTVQAFTHEMASRGQFAQMTEASFDAARRRIKTRAAMTVIVIFLVFSGVVGVLW 285
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Match: ABC (transporter transmembrane domain-containing protein n=1 Tax=Roseobacter litoralis TaxID=42443 RepID=UPI00165300AB)

HSP 1 Score: 275 bits (703), Expect = 8.930e-87
Identity = 153/178 (85.96%), Postives = 169/178 (94.94%), Query Frame = 1 
Query:    1 RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDAAKRRIYTRALMTVIVIFLVFAGVVGVLW 534
            RLGERVVADIRKAVF RVI MSP+FYE++MTGEVLSRITTDTTLILSVIGSSVSIALRN+LIF+GGL LMMLTSAKLT LVLLIVPAV++PILVLGRRLRV+SRENQDWIAASS +ASEAL+AVQTVQAFTHE +SR QFSDVTE S+DAA+RR+ TRA+MTVIVIFLVFAG+VGVLW
Sbjct:  104 RLGERVVADIRKAVFARVIDMSPAFYEKVMTGEVLSRITTDTTLILSVIGSSVSIALRNLLIFVGGLILMMLTSAKLTGLVLLIVPAVIVPILVLGRRLRVLSRENQDWIAASSANASEALSAVQTVQAFTHEAVSREQFSDVTELSYDAARRRVTTRAMMTVIVIFLVFAGIVGVLW 281
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Match: ABC (transporter n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A073JF77_9RHOB)

HSP 1 Score: 275 bits (703), Expect = 1.010e-86
Identity = 159/178 (89.33%), Postives = 167/178 (93.82%), Query Frame = 1 
Query:    1 RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIGSSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDAAKRRIYTRALMTVIVIFLVFAGVVGVLW 534
            RLGERVVADIRKAVFDRVIGMSP+FYE+IMTGEVLSRITTDTTLILSVIGSS SIALRN+LIF GGL LM+LTSAKLT LVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEAL AVQTVQAFT E  +R QFSDVTERS+DAA RRI TRALMT+IVIFLVF+GVVGVLW
Sbjct:  109 RLGERVVADIRKAVFDRVIGMSPAFYEKIMTGEVLSRITTDTTLILSVIGSSASIALRNMLIFAGGLVLMLLTSAKLTGLVLLIVPAVVIPILVLGRRLRVISRENQDWIAASSGSASEALGAVQTVQAFTQEAATRAQFSDVTERSYDAAGRRIRTRALMTMIVIFLVFSGVVGVLW 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75721.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ABC1.030e-9392.13transporter (Fragment) n=1 Tax=Sulfitobacter sp. T... [more]
ABC4.630e-9088.20transporter transmembrane domain-containing protei... [more]
ABC3.650e-8987.64transporter n=1 Tax=Sulfitobacter sp. JL08 TaxID=2... [more]
ABC5.150e-8988.20transporter transmembrane domain-containing protei... [more]
ABC7.260e-8987.64transporter transmembrane domain-containing protei... [more]
ATP-binding1.600e-8786.52cassette domain-containing protein n=1 Tax=Roseoba... [more]
ABC5.890e-8788.20transporter n=1 Tax=Sulfitobacter sp. SK011 TaxID=... [more]
ATP-binding6.970e-8788.20cassette subfamily B protein n=7 Tax=Sulfitobacter... [more]
ABC8.930e-8785.96transporter transmembrane domain-containing protei... [more]
ABC1.010e-8689.33transporter n=6 Tax=Roseobacteraceae TaxID=2854170... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75721contigH-canaliculatus_M_contigs75721:2..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380367.JIBC01000003_gene3915
Preferred namemsbA2
PFAMsABC_membrane,ABC_tran
Model size534
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06147
KEGG TC3.A.1.106,3.A.1.109,3.A.1.21
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.89e-88
EggNOG OGsCOG1132@1|root,COG1132@2|Bacteria,1MUBM@1224|Proteobacteria,2TQMR@28211|Alphaproteobacteria,3ZVQE@60136|Sulfitobacter
DescriptionABC transporter transmembrane region
Cds size534
COG categoryV
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854094.4178522-CDS-H-canaliculatus_M_contigs75721:1..5351696854094.4178522-CDS-H-canaliculatus_M_contigs75721:1..535Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75721 2..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75721.1.1prot_H-canaliculatus_M_contigs75721.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75721 2..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75721.1.1

>prot_H-canaliculatus_M_contigs75721.1.1 ID=prot_H-canaliculatus_M_contigs75721.1.1|Name=mRNA_H-canaliculatus_M_contigs75721.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=178bp
RLGERVVADIRKAVFDRVIGMSPSFYEQIMTGEVLSRITTDTTLILSVIG
SSVSIALRNILIFIGGLALMMLTSAKLTALVLLIVPAVVIPILVLGRRLR
VISRENQDWIAASSGSASEALTAVQTVQAFTHETISRRQFSDVTERSFDA
AKRRIYTRALMTVIVIFLVFAGVVGVLW
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mRNA from alignment at H-canaliculatus_M_contigs75721:2..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75721.1.1 ID=mRNA_H-canaliculatus_M_contigs75721.1.1|Name=mRNA_H-canaliculatus_M_contigs75721.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=534bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75721:2..535- (Hapterophycus canaliculatus Oshoro7m male)
CGCTTGGGTGAACGCGTCGTCGCTGATATTCGCAAAGCGGTGTTTGACCG
TGTGATCGGCATGTCCCCGTCTTTTTACGAACAAATAATGACCGGCGAAG
TCCTGAGCCGCATCACAACAGACACCACGCTGATCCTCAGTGTGATTGGA
TCATCCGTGTCGATCGCGCTGCGTAACATACTGATTTTTATAGGTGGTTT
GGCATTGATGATGCTGACGTCTGCCAAATTGACGGCCCTTGTGCTGCTGA
TCGTTCCCGCCGTTGTGATCCCGATTTTGGTGTTGGGTCGTCGCTTGCGG
GTGATCAGCCGTGAAAATCAGGATTGGATTGCCGCCAGTTCCGGTAGCGC
ATCCGAGGCGCTGACGGCCGTGCAAACGGTGCAGGCCTTTACCCATGAGA
CCATCAGCCGTCGGCAGTTTTCTGACGTCACAGAGCGCAGCTTTGATGCG
GCCAAACGGCGGATCTACACGCGCGCCTTGATGACGGTGATCGTGATCTT
TCTGGTCTTTGCCGGTGTCGTCGGCGTGTTGTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75721:2..535-

>mRNA_H-canaliculatus_M_contigs75721.1.1 ID=mRNA_H-canaliculatus_M_contigs75721.1.1|Name=mRNA_H-canaliculatus_M_contigs75721.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75721:2..535- (Hapterophycus canaliculatus Oshoro7m male)
CGCTTGGGTGAACGCGTCGTCGCTGATATTCGCAAAGCGGTGTTTGACCG
TGTGATCGGCATGTCCCCGTCTTTTTACGAACAAATAATGACCGGCGAAG
TCCTGAGCCGCATCACAACAGACACCACGCTGATCCTCAGTGTGATTGGA
TCATCCGTGTCGATCGCGCTGCGTAACATACTGATTTTTATAGGTGGTTT
GGCATTGATGATGCTGACGTCTGCCAAATTGACGGCCCTTGTGCTGCTGA
TCGTTCCCGCCGTTGTGATCCCGATTTTGGTGTTGGGTCGTCGCTTGCGG
GTGATCAGCCGTGAAAATCAGGATTGGATTGCCGCCAGTTCCGGTAGCGC
ATCCGAGGCGCTGACGGCCGTGCAAACGGTGCAGGCCTTTACCCATGAGA
CCATCAGCCGTCGGCAGTTTTCTGACGTCACAGAGCGCAGCTTTGATGCG
GCCAAACGGCGGATCTACACGCGCGCCTTGATGACGGTGATCGTGATCTT
TCTGGTCTTTGCCGGTGTCGTCGGCGTGTTGTGG
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