mRNA_H-canaliculatus_M_contigs75703.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs75703.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs75703.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 3.770e-66
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1

Query:    1 WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNADTGEDFGPAMNNL 336
            WGVALATHGF RGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADR+GWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTD+GLLSVGNADTGEDFGPAM+NL
Sbjct: 2409 WGVALATHGFARGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDIGLLSVGNADTGEDFGPAMSNL 2520

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BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Match: Aste57867_15865 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L796_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.830e-25
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 1

Query:    1 WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNADTGEDFGPAMNNL 336
            WG+ ++T+G    +G+H W VRLD   + GHVFLGV TR+ ++ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A + L
Sbjct:  841 WGMVISTYGCAPNTGLHEWAVRLDRCEK-GHVFLGVCTREASVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLLDEDSDWGVAFDGL 951

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BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Match: HECT (E3 ubiquitin ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZRW4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.830e-25
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 1

Query:    1 WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNADTGEDFGPAMNNL 336
            WG+ L+T+G    +G+H W VRLD   + GHVFLGV+TR+ ++ +Y+G DR+GWG + ++ L+H  S++R  YG   S G  V + LNTD G LS G  D   D+G A + L
Sbjct:  843 WGMVLSTYGCAPNTGVHEWAVRLDRCEK-GHVFLGVSTREASVATYVGGDRHGWGLIGTRALWHNRSKVRGDYGDGFSTGSVVRIRLNTDTGALSFGLLDDDSDWGVAFDGL 953

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BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Match: B30.2/SPRY (domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8C6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.160e-25
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1

Query:    1 WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNADTGEDFGPAMNNL 336
            WG+ L+T+     +G+H W VRLD   + GHVFLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A + L
Sbjct:  213 WGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGL 323

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BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Match: B30.2/SPRY (domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F9E8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.290e-25
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1

Query:    1 WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNADTGEDFGPAMNNL 336
            WG+ L+T+     +G+H W VRLD   + GHVFLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A + L
Sbjct:  334 WGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGL 444

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BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Match: B30.2/SPRY (domain-containing protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A7N1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.350e-25
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1

Query:    1 WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNADTGEDFGPAMNNL 336
            WG+ L+T+     +G+H W VRLD   + GHVFLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A + L
Sbjct:  334 WGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGL 444

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BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Match: B30.2/SPRY (domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ANH5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.400e-25
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1

Query:    1 WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNADTGEDFGPAMNNL 336
            WG+ L+T+     +G+H W VRLD   + GHVFLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A + L
Sbjct:  334 WGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGL 444

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BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Match: HECT (E3 ubiquitin ligase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YS56_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.450e-25
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 1

Query:    1 WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNADTGEDFGPAMNNL 336
            WG+ L+T+G    +G+H W VRLD   + GHVFLGV+TR+ ++ +Y+G DR+GWG + ++ L+H  S++R  YG   S G  V + LNTD G LS G  D   D+G A + L
Sbjct:  808 WGMVLSTYGCAPNTGLHEWAVRLDRCEK-GHVFLGVSTREASVATYVGGDRHGWGLIGTRALWHNRSKVRGDYGDGFSTGSVVRIRLNTDTGALSFGLLDDDSDWGVAFDGL 918

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Match: B30.2/SPRY (domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VC71_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.460e-25
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1

Query:    1 WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNADTGEDFGPAMNNL 336
            WG+ L+T+     +G+H W VRLD   + GHVFLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A + L
Sbjct:  862 WGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGL 972

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FY61_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.590e-25
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1

Query:    1 WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNADTGEDFGPAMNNL 336
            WG+ L+T+     +G+H W VRLD   + GHVFLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A + L
Sbjct:  912 WGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGL 1022

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs75703.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	3.770e-66	96.43	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Aste57867_15865	4.830e-25	44.64	protein n=1 Tax=Aphanomyces stellatus TaxID=120398...	[more]
HECT	4.830e-25	44.64	E3 ubiquitin ligase n=1 Tax=Achlya hypogyna TaxID=...	[more]
B30.2/SPRY	6.160e-25	45.54	domain-containing protein n=1 Tax=Aphanomyces asta...	[more]
B30.2/SPRY	6.290e-25	45.54	domain-containing protein (Fragment) n=2 Tax=Aphan...	[more]
B30.2/SPRY	6.350e-25	45.54	domain-containing protein (Fragment) n=4 Tax=Aphan...	[more]
B30.2/SPRY	6.400e-25	45.54	domain-containing protein (Fragment) n=3 Tax=Aphan...	[more]
HECT	6.450e-25	44.64	E3 ubiquitin ligase (Fragment) n=1 Tax=Thraustothe...	[more]
B30.2/SPRY	6.460e-25	45.54	domain-containing protein n=2 Tax=Aphanomyces asta...	[more]
Uncharacterized	6.590e-25	45.54	protein n=2 Tax=Aphanomyces astaci TaxID=112090 Re...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs75703	contig	H-canaliculatus_M_contigs75703:53..388 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	112098.XP_008604658.1
PFAMs	HECT,Laminin_G_3,MIB_HERC2,SPRY,UBA
Model size	336
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10608
KEGG Pathway	ko04120,map04120
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.47e-25
EggNOG OGs	COG5184@1\|root,KOG2177@1\|root,KOG2242@1\|root,KOG1426@2759\|Eukaryota,KOG2177@2759\|Eukaryota,KOG2242@2759\|Eukaryota
EC	2.3.2.27
Description	RNA localization to chromatin
Cds size	336
COG category	L
BRITE	ko00000,ko00001,ko01000,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854094.1653118-CDS-H-canaliculatus_M_contigs75703:52..388	1696854094.1653118-CDS-H-canaliculatus_M_contigs75703:52..388	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75703 53..388 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs75703.1.1	prot_H-canaliculatus_M_contigs75703.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs75703 53..388 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs75703:53..388+
coding sequence from alignment at H-canaliculatus_M_contigs75703:53..388+

protein sequence of mRNA_H-canaliculatus_M_contigs75703.1.1

>prot_H-canaliculatus_M_contigs75703.1.1 ID=prot_H-canaliculatus_M_contigs75703.1.1|Name=mRNA_H-canaliculatus_M_contigs75703.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp
WGVALATHGFPRGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGAD
RNGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDVGLLSVGNAD
TGEDFGPAMNNL

mRNA from alignment at H-canaliculatus_M_contigs75703:53..388+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs75703.1.1 ID=mRNA_H-canaliculatus_M_contigs75703.1.1|Name=mRNA_H-canaliculatus_M_contigs75703.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75703:53..388+ (Hapterophycus canaliculatus Oshoro7m male)
TGGGGTGTCGCCCTCGCCACCCACGGGTTTCCTCGCGGCAGCGGCATTCA
CCGGTGGCGGGTCCGCCTGGATAGCGTCAACCGACGCGGGCACGTCTTCC
TCGGCGTGGCCACCCGGCAGACAGCGCTGGGGAGCTACCTGGGCGCCGAC
CGCAACGGCTGGGGCTACCTCGTGAGCCAGGACCTGTACCACGGAGGCTC
TCGGCTGCGGTCTGGGTACGGGGCGCGGATGTCCGCCGGCATGACCGTCG
AGCTCACCCTCAACACGGATGTCGGGCTACTTTCCGTGGGAAACGCCGAC
ACTGGGGAGGACTTCGGCCCCGCCATGAACAACCTC

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75703:53..388+

>mRNA_H-canaliculatus_M_contigs75703.1.1 ID=mRNA_H-canaliculatus_M_contigs75703.1.1|Name=mRNA_H-canaliculatus_M_contigs75703.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75703:53..388+ (Hapterophycus canaliculatus Oshoro7m male)
TGGGGTGTCGCCCTCGCCACCCACGGGTTTCCTCGCGGCAGCGGCATTCA
CCGGTGGCGGGTCCGCCTGGATAGCGTCAACCGACGCGGGCACGTCTTCC
TCGGCGTGGCCACCCGGCAGACAGCGCTGGGGAGCTACCTGGGCGCCGAC
CGCAACGGCTGGGGCTACCTCGTGAGCCAGGACCTGTACCACGGAGGCTC
TCGGCTGCGGTCTGGGTACGGGGCGCGGATGTCCGCCGGCATGACCGTCG
AGCTCACCCTCAACACGGATGTCGGGCTACTTTCCGTGGGAAACGCCGAC
ACTGGGGAGGACTTCGGCCCCGCCATGAACAACCTC