mRNA_H-canaliculatus_M_contigs757.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs757.3.1
Unique NamemRNA_H-canaliculatus_M_contigs757.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs757.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs757contigH-canaliculatus_M_contigs757:5972..6557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size586
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.9110112-UTR-H-canaliculatus_M_contigs757:5971..60381696854093.9110112-UTR-H-canaliculatus_M_contigs757:5971..6038Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs757 5972..6038 -
1696854093.9392686-UTR-H-canaliculatus_M_contigs757:6395..65571696854093.9392686-UTR-H-canaliculatus_M_contigs757:6395..6557Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs757 6396..6557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.9292731-CDS-H-canaliculatus_M_contigs757:6038..63951696854093.9292731-CDS-H-canaliculatus_M_contigs757:6038..6395Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs757 6039..6395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs757.3.1prot_H-canaliculatus_M_contigs757.3.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs757 6039..6395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs757.3.1

>prot_H-canaliculatus_M_contigs757.3.1 ID=prot_H-canaliculatus_M_contigs757.3.1|Name=mRNA_H-canaliculatus_M_contigs757.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=119bp
MKCCLSIASPNERVAQSCTGRCQLQYFYLSGCDSFASSQRQRLALFLLFG
GPLNYVGVGEQSGYSDHFRLHRDERRGACRERRGFDMPQHLNGVLVVTLP
SGLGFTLDSRPGHATCVP*
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mRNA from alignment at H-canaliculatus_M_contigs757:5972..6557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs757.3.1 ID=mRNA_H-canaliculatus_M_contigs757.3.1|Name=mRNA_H-canaliculatus_M_contigs757.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=586bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs757:5972..6557- (Hapterophycus canaliculatus Oshoro7m male)
GTTCGATCTGCCGTAGGTCTGCCTGCACCAAGTTTTAAAAGGGAGTAAAC
GCCGCGGCTGTTCGCGTGCTCTTGACCCCACGCTCTGGCTCCAAGGGGGA
AATTGTGTTTGGTTTGTTATTCGGCGGTTTCAAGAAGGAAGTCAAGTGCG
CGCGTGGAGTAGATGAAGTGTTGCCTTTCGATCGCGAGTCCGAACGAGCG
CGTGGCACAAAGTTGTACAGGGCGTTGCCAGTTGCAGTATTTTTACTTGA
GTGGTTGTGACTCCTTCGCTTCGTCTCAGAGGCAGAGACTAGCCCTGTTC
TTGTTGTTCGGCGGTCCCCTAAATTACGTTGGAGTGGGCGAGCAGAGCGG
ATATAGCGACCACTTCCGTTTGCATCGTGACGAGCGCCGCGGCGCGTGCC
GCGAAAGAAGAGGTTTTGACATGCCGCAGCATTTGAACGGAGTTTTGGTC
GTTACTCTTCCGAGTGGTTTGGGCTTTACGCTGGATTCCAGGCCCGGCCA
TGCCACTTGCGTGCCGTAAGTCTTGCCGCTCTTCTGACAAGTTGTTTTCT
GGACGGACGTATCAACCTTCAAACAACGTATTCCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs757:5972..6557-

>mRNA_H-canaliculatus_M_contigs757.3.1 ID=mRNA_H-canaliculatus_M_contigs757.3.1|Name=mRNA_H-canaliculatus_M_contigs757.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=357bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs757:5972..6557- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGTGTTGCCTTTCGATCGCGAGTCCGAACGAGCGCGTGGCACAAAG
TTGTACAGGGCGTTGCCAGTTGCAGTATTTTTACTTGAGTGGTTGTGACT
CCTTCGCTTCGTCTCAGAGGCAGAGACTAGCCCTGTTCTTGTTGTTCGGC
GGTCCCCTAAATTACGTTGGAGTGGGCGAGCAGAGCGGATATAGCGACCA
CTTCCGTTTGCATCGTGACGAGCGCCGCGGCGCGTGCCGCGAAAGAAGAG
GTTTTGACATGCCGCAGCATTTGAACGGAGTTTTGGTCGTTACTCTTCCG
AGTGGTTTGGGCTTTACGCTGGATTCCAGGCCCGGCCATGCCACTTGCGT
GCCGTAA
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