mRNA_H-canaliculatus_M_contigs757.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs757.1.1
Unique NamemRNA_H-canaliculatus_M_contigs757.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs757.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL2_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 1.950e-59
Identity = 113/162 (69.75%), Postives = 125/162 (77.16%), Query Frame = 1 
Query:  250 SPYVLPPPSWSLSDLNVTTNDERG-ETA-GAVLTREEVMKLCALAHIELAPEG---SGPDGGLDVTAVQKDVGAMLRCMQTMRRE--DSDDGQYRKGRGEREEEEVVGGQRGGVEEEGPWGGAASWSAPLQEDVVSDGGIQEQVLGAAQQTEDGFFTAPKVV 714
            SPY LPPP+WSLSDLNVT +DERG +TA  AVL+ EEV KLCALAHIELAPEG   S   G LDV+AV+KDVGAMLRCMQTMRRE  DS  G   +G  E E EE          E+GPWGGA SW+APL+EDVVSDGGIQ++VLGAAQ TEDGFFTAPKVV
Sbjct:   76 SPYTLPPPTWSLSDLNVTDDDERGGDTARSAVLSNEEVAKLCALAHIELAPEGADGSCSSGKLDVSAVKKDVGAMLRCMQTMRREIDDSSGGGXXRGNQEIEGEEG---------EDGPWGGAVSWAAPLEEDVVSDGGIQKEVLGAAQHTEDGFFTAPKVV 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs757.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.950e-5969.75protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs757contigH-canaliculatus_M_contigs757:3387..5195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog551789.ATVJ01000001_gene2624
Preferred namegatC
PFAMsGlu-tRNAGln
Model size717
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00010
KEGG koko:K02435
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
Hectar predicted targeting categorymitochondrion
Exons3
Evalue3.85e-07
EggNOG OGsCOG0721@1|root,COG0721@2|Bacteria,1MZQP@1224|Proteobacteria,2UBSZ@28211|Alphaproteobacteria,43Y62@69657|Hyphomonadaceae
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003540.1
EC6.3.5.6,6.3.5.7
DescriptionAllows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Cds size714
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.977673-UTR-H-canaliculatus_M_contigs757:3386..33891696854093.977673-UTR-H-canaliculatus_M_contigs757:3386..3389Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs757 3387..3389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.9910128-CDS-H-canaliculatus_M_contigs757:3389..37401696854093.9910128-CDS-H-canaliculatus_M_contigs757:3389..3740Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs757 3390..3740 +
1696854094.004308-CDS-H-canaliculatus_M_contigs757:4482..47521696854094.004308-CDS-H-canaliculatus_M_contigs757:4482..4752Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs757 4483..4752 +
1696854094.0153828-CDS-H-canaliculatus_M_contigs757:5102..51951696854094.0153828-CDS-H-canaliculatus_M_contigs757:5102..5195Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs757 5103..5195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs757.1.1prot_H-canaliculatus_M_contigs757.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs757 3390..5195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs757.1.1

>prot_H-canaliculatus_M_contigs757.1.1 ID=prot_H-canaliculatus_M_contigs757.1.1|Name=mRNA_H-canaliculatus_M_contigs757.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=238bp
MVTPRPSCFMKKARICVAAAEKLSAMPWTRCLSGTSSRKIGTTASVRAVD
YSGDDQQQGEDAGRKRGREESRTTLTNVSAIPSPYVLPPPSWSLSDLNVT
TNDERGETAGAVLTREEVMKLCALAHIELAPEGSGPDGGLDVTAVQKDVG
AMLRCMQTMRREDSDDGQYRKGRGEREEEEVVGGQRGGVEEEGPWGGAAS
WSAPLQEDVVSDGGIQEQVLGAAQQTEDGFFTAPKVV*
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mRNA from alignment at H-canaliculatus_M_contigs757:3387..5195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs757.1.1 ID=mRNA_H-canaliculatus_M_contigs757.1.1|Name=mRNA_H-canaliculatus_M_contigs757.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1809bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs757:3387..5195+ (Hapterophycus canaliculatus Oshoro7m male)
CGGATGGTGACCCCTCGTCCCTCTTGTTTCATGAAAAAAGCTAGGATCTG
CGTTGCCGCTGCAGAAAAACTGTCAGCAATGCCATGGACACGCTGTCTGT
CAGGCACCTCCAGCAGGAAGATTGGAACAACAGCCAGCGTCCGTGCCGTA
GACTACAGCGGCGATGACCAGCAACAGGGAGAGGACGCGGGAAGAAAGCG
AGGACGAGAGGAGAGCAGAACTACTCTAACGAACGTTTCCGCAATTCCAT
CTCCGTACGTTCTCCCGCCACCATCGTGGTCGCTGTCGGATCTGAACGTC
ACCACCAACGACGAAAGAGGAGAGACTGCGGGAGCGGTGCTCACCCGCGA
GGAGGTATGACACGGGCAAACGGCAGCGCACGTTCGCACAACACCAGCGG
CACGAGAAAGGGTGTTATTCTATCGTAACATAAGCACGAGTAGTCAAGGT
GGGACAGGACAGAGTATCAAGCTTTCGAAAGGAAAGATGGAAATTGAAGT
TTGGTGCTGTAACACAGCAGCAGGCGCCGCATAATGGAATTCGGCTTCAA
GTACTTGTACTTGACAGCAACAGCAGGATCTGTGCTGTGCGCAGCTACCC
GCCTCCTGAGCGGGGTATACACTACCTACTACTACCAGGGATCAGATGTT
ACATCCTGCTGTGCAATTCTTTTACTCCGAAGCACGCCACGTGCGCGCAT
GCTTATCCCTTCGAACTGCCGTCGTCGATGTCGTCATGTAGGGCGGACTG
AGCGTAATCTCTCACATTCTCTGACTGAAACCGGTTAGATAGAAGACCAA
CCTACGATGTGGGGGGGATTTCTTGCCGAACAGAATAAGTGGGGGTTGTA
AATACCCGGTAGGGATTTCGAGTCTCTAGTTCGGTGGCAGAGGTCGACGT
CTCGTATCGAGAAAGCCTCCCGAATCCTGCGAAAAGAGCGATAGCAATTA
GTTTGCTCTCCTGTACTGCCGTAGGTCGGGACCGCCCCGTGCGCGGTTCG
GTTTTTGCCGCATAGGCTGCCGCATCGACAAGATCTTCTCATCATCCAAC
GTTCGCCGCCAATTCTCGACTACTCCGATCGTCGAATGACCCAAAGGTTA
TGAAGCTGTGCGCCCTGGCGCACATCGAACTCGCGCCGGAGGGCAGCGGC
CCTGACGGGGGGCTGGATGTAACCGCTGTTCAGAAGGACGTCGGGGCCAT
GCTGAGATGCATGCAGACCATGCGAAGGGAGGACAGCGACGATGGGCAGT
ACCGAAAGGGACGAGGGGAGAGAGAGGAGGAGGAGGTCGTGGGGGGGCAG
CGGGGGGGCGTCGAGGAGGAGGGGCCTTGGGGGGGCGCTGCTTCTTGGTC
TGCGCCTTTGCAAGAGGTGCGTTTCGCGCGGATTTGGTGCACGCCACACG
CGCATCGGTCTCGAGTTTTTTGGCGAGAACAAGCGATGTGCTGTTCGAGT
CTCCGTGAGCCACGTCGCGAGTCGGAGATTACGTCGAACGAGACGTTGCA
TCTCATAATGTGGAATGCCTGTTGAGGTTCGGGAGCTTGCCAACCGCTGT
TGGCTTCGGAAAAAGGACGCTCCGGCTGGTGGTGTGGTCGACGCATTGAC
CCCAACCCCTGGGGATGCGCTCTCATCGGTTCCCGATTTCTGCCTTCTGA
CAACCTCGTGCCGCCGTCTGGGTGGCCCCGCATACGCTCGCGAAAACGCG
CGGAAATGACTCGCAGGACGTGGTTTCGGATGGAGGCATCCAAGAGCAAG
TCCTTGGGGCGGCGCAACAGACAGAGGACGGCTTCTTCACCGCACCCAAA
GTGGTATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs757:3387..5195+

>mRNA_H-canaliculatus_M_contigs757.1.1 ID=mRNA_H-canaliculatus_M_contigs757.1.1|Name=mRNA_H-canaliculatus_M_contigs757.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs757:3387..5195+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGTGACCCCTCGTCCCTCTTGTTTCATGAAAAAAGCTAGGATCTGCGT
TGCCGCTGCAGAAAAACTGTCAGCAATGCCATGGACACGCTGTCTGTCAG
GCACCTCCAGCAGGAAGATTGGAACAACAGCCAGCGTCCGTGCCGTAGAC
TACAGCGGCGATGACCAGCAACAGGGAGAGGACGCGGGAAGAAAGCGAGG
ACGAGAGGAGAGCAGAACTACTCTAACGAACGTTTCCGCAATTCCATCTC
CGTACGTTCTCCCGCCACCATCGTGGTCGCTGTCGGATCTGAACGTCACC
ACCAACGACGAAAGAGGAGAGACTGCGGGAGCGGTGCTCACCCGCGAGGA
GGTTATGAAGCTGTGCGCCCTGGCGCACATCGAACTCGCGCCGGAGGGCA
GCGGCCCTGACGGGGGGCTGGATGTAACCGCTGTTCAGAAGGACGTCGGG
GCCATGCTGAGATGCATGCAGACCATGCGAAGGGAGGACAGCGACGATGG
GCAGTACCGAAAGGGACGAGGGGAGAGAGAGGAGGAGGAGGTCGTGGGGG
GGCAGCGGGGGGGCGTCGAGGAGGAGGGGCCTTGGGGGGGCGCTGCTTCT
TGGTCTGCGCCTTTGCAAGAGGACGTGGTTTCGGATGGAGGCATCCAAGA
GCAAGTCCTTGGGGCGGCGCAACAGACAGAGGACGGCTTCTTCACCGCAC
CCAAAGTGGTATAG
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