mRNA_H-canaliculatus_M_contigs7569.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE) HSP 1 Score: 385 bits (988), Expect = 3.170e-130 Identity = 211/284 (74.30%), Postives = 236/284 (83.10%), Query Frame = 1
Query: 13 HLGAYWNILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSAGVGAAGVGVVAGTTSTARPVAVALHVLFSLPLYSNLLLVARSSYAYEKLSLAVDQALGPLALMLGLIGVVLR 864
+L AYW ILRP+NIP+SFGLVAAGALV+SH ALL+PKVLLTAFAAA+VSVGSCVLNDWFDIELDRVN+PERPLVTGEV+PVHALGIG+ FLLAAV SAS V+PAALQATIVASVALT AYTPLLKPIPL+KNFVVAM GVA+TLTP+VLTFFVI HRE+LMDI DV+GDRE GVRTLPV+MGR+AAL A LLS GVGAAGVG++ GT RP A AL LF LPLY NL LV RSSY+ E+LS A++Q LGPLAL+LGL+GVVLR
Sbjct: 132 NLSAYWEILRPNNIPASFGLVAAGALVASHTAVALLEPKVLLTAFAAAAVSVGSCVLNDWFDIELDRVNEPERPLVTGEVVPVHALGIGVAFLLAAVASASFVNPAALQATIVASVALTLAYTPLLKPIPLVKNFVVAMVIAAAIGAGGLAAGAGVASTLTPSVLTFFVIGHREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAAGVGILEGTADPERPAAAALSALFVLPLYVNLFLVGRSSYSKERLSSAIEQTLGPLALVLGLMGVVLR 415
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Match: Prenyltransferase, (UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI) HSP 1 Score: 323 bits (829), Expect = 1.230e-108 Identity = 187/230 (81.30%), Postives = 207/230 (90.00%), Query Frame = 1
Query: 1 KPAPHLGAYWNILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSAGVGAAGVGVVAGTT 690
K +P+L AYW ILRP+NIP+SFGLVAAGALV+SH AL +PKVLLTAFAAA+VSVGSCVLNDWFDIELDRVN+PERPLVTGEV+PVHALGIG+ FLLAAV SAS V+PAALQATIVASVALT AYTPLLKPIPL+KNFVVAM XXXXXXXXXXXX GVA+TLTP+VLTFFVI HRE+LMDI DV+GDRE GVRTLPV+MGR+AAL A LLSAGV AAGVG++ GTT
Sbjct: 10 KKSPNLSAYWEILRPNNIPASFGLVAAGALVASHTAVALFEPKVLLTAFAAAAVSVGSCVLNDWFDIELDRVNEPERPLVTGEVVPVHALGIGVAFLLAAVASASFVNPAALQATIVASVALTLAYTPLLKPIPLVKNFVVAMVIXXXXXXXXXXXXAGVASTLTPSVLTFFVIGHREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSAGVVAAGVGILEGTT 239
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Match: Geranylgeranylglycerol-phosphate (geranylgeranyltransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P9S4_9CHLO) HSP 1 Score: 119 bits (298), Expect = 1.190e-27 Identity = 76/207 (36.71%), Postives = 109/207 (52.66%), Query Frame = 1
Query: 19 GAYWNILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAAT--LTPTVL-TFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLA 630
GA + R HN+ S LVA GA S ++ AL P V L A + ++V SCV+ND+FD+ +D N P++PL +G + AL + ++ A + P L++ + S A T YTP+ K + +KN VA G A L P VL F I +REILMD+TD +GD G++TLPV++G +AAL A
Sbjct: 74 GALLRLARIHNLAPSTLLVAVGACAGSGSLAALRSPVVWLMALLSGGIAVSSCVVNDYFDLRVDLRNAPDKPLASGAITTDAALLLSSALYCGVLIVACFMEPTQLRSIVALSAAATLLYTPIFKRLTAVKNATVAAVIALAPLAGALAAGAGEAGARRLLPAVLWAFGGILYREILMDVTDAEGDAANGIKTLPVVLGPRAALAAA 280
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JHR6_GUITC) HSP 1 Score: 114 bits (286), Expect = 2.710e-27 Identity = 81/209 (38.76%), Postives = 114/209 (54.55%), Query Frame = 1
Query: 40 RPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHAL-GIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVA-MXXXXXXXXXXXXXXXGVAATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSAGVGA 660
RP NIP+ GL AG+L +S ++ L DP V L A +ASV VGS ++ND+FD P+ G V P AL +L++ + + L+A + S+ LT YTPLLK + +KN VVA + + +TL P++ F +I +E+LMDI DV GD E G+RT+PV++G K A LA LLSAG+ A
Sbjct: 4 RPQNIPAELGLSLAGSLFASRSLACLADPLVWLVALFSASVGVGSMLINDYFDYRSGADAYKSNPMAEGTVHPEQALLAASSWYLMSFFFACILLESFQLRALVSVSLLLTFLYTPLLKGVLFLKNLVVAFVIAQAIVLGGLAVGDVRMQSTLLPSLYMFCLILWQEVLMDIRDVRGDAEAGIRTIPVVLGCKFAALLA--LLSAGLAA 210
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Match: Digeranylgeranylglyceryl (phosphate synthase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MBQ7_9CHLO) HSP 1 Score: 112 bits (280), Expect = 1.520e-25 Identity = 72/201 (35.82%), Postives = 111/201 (55.22%), Query Frame = 1
Query: 34 ILRPHNIPSSFGLVAAGALVSS-HAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVH-ALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAAT---LTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAAL 621
+ R HN+ SF LV GA S + AL P V L + + ++V SCV ND+FD+++DR N P +PL +G V+P+ AL + A +++A + P+ L++ I S T YTP+ K + +KN VA+ G A L T+ F + REI+MD+TD++GDR G++TLPV++G++ AL
Sbjct: 20 LARVHNLLPSFLLVMVGAWAGSGRDLAALRAPGVWLMSLLSGGIAVSSCVFNDYFDVQVDRANAPHKPLASG-VLPLDIALLLSSSVYCAVLITACFMEPSQLRSIIALSAGATLLYTPVFKKLTAIKNATVAVVIALAPLGGALAAGAGEAGVMRLLPATLFAFSGVMFREIVMDLTDLEGDRAAGIKTLPVMIGQRGAL 219
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Match: UbiA (prenyltransferase family n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PTZ1_9CHLO) HSP 1 Score: 111 bits (277), Expect = 9.760e-25 Identity = 76/220 (34.55%), Postives = 112/220 (50.91%), Query Frame = 1
Query: 16 LGAYWNILRPHNIPSSFGLVAAGALVSS-HAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAATLT---PTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSAGVGAA 663
L Y + R HN+ S LV GA S H V A+ V L + ++V SCV+ND+FD+++D N P++PL +G + P AL + +++A + P+ L++ + S A T YTPL K + +KN VA G A + T+ F + REILMD+ D +GDR+ V TLPV++G+ AAL A +L G G A
Sbjct: 36 LSTYLKLARIHNLVPSVILVVVGAWAGSGHRVAAVQSISVWLMGLISGGLAVASCVVNDYFDLKIDASNAPDKPLPSGAIAPDAALLLSSLLYCGCLIAACLMEPSRLRSIVAFSAAATLLYTPLFKRLTGVKNATVATVIALAPLAGALAAGAGDAGLMRLMPATLFAFSGVMFREILMDLNDAEGDRQARVMTLPVLLGKPAALLCACTVLLLGSGGA 255
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Match: Digeranylgeranylglyceryl (phosphate synthase n=1 Tax=Candidatus Halobonum tyrrellensis G22 TaxID=1324957 RepID=V4HJF9_9EURY) HSP 1 Score: 105 bits (263), Expect = 3.000e-23 Identity = 87/235 (37.02%), Postives = 120/235 (51.06%), Query Frame = 1
Query: 16 LGAYWNILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAAT--LTPTVLTFFVIAH-----REILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSAGVGAAGVGVVAGTTSTA 699
+G Y + RP N ++ L A GA V AV + L A A A + +ND+FD E+DR+N P+RP+ +G V P AL + +AAVV+A+A+ AL +V +AL AYT L K +P + N VV G AA L V T F +A RE++ D+ DV GDRE G+RTLPV+ G +A + LA V ++A V A+G GT A
Sbjct: 8 VGGYLELTRPGNAVAAAVLTAIGAFV---AVGTSRPVPLALAAVATAFATGAGNAVNDYFDREIDRLNRPDRPIPSGRVSPRGALAFSLALFVAAVVAAAALPRLALAIAVVNLLALL-AYTELFKGLPGVGNAVVGYLTGSTFLF-------GAAAVEGLGSAVWTLFALAAVATFARELVKDVEDVAGDREEGLRTLPVVAGERATVTLAVVAMTAAVAASGFPYARGTLGAA 231
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Match: Pyruvate (carboxylase n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TD11_CHLSO) HSP 1 Score: 105 bits (261), Expect = 1.490e-21 Identity = 88/216 (40.74%), Postives = 121/216 (56.02%), Query Frame = 1
Query: 16 LGAYWNILRPHNIPSSFGLVAAGALVSS-HAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXG----VAATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLAAVLLSA 648
L YW ++R N S LV GA + + AL V A+ +V++ SC +ND+FD ++D VNDP++P+ +G + AL + + + A V A ++ + S ALT YTP+LK L+KN VVA XXXXXXXXXXXX G + A L P + I REI+MDI D GD GV TLPV++G +AALG+ LL+A
Sbjct: 58 LQGYWRLVRGWNALPSMALVLLGAWTGAGKTLLALKHLTVWFMGLASGAVAMASCTINDYFDADIDAVNDPQKPVPSGLIPRDRALLVAALLYIGLLALACLVPNAGVRLIVALSSALTVLYTPVLKKQTLVKNCVVAXXXXXXXXXXXXXAGAGGGPGLRAVLAPCAFLWLGIMFREIMMDIQDRCGDGLAGVLTLPVVLGPRAALGIGFGLLAA 273
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HC55_9ZZZZ) HSP 1 Score: 100 bits (250), Expect = 5.940e-21 Identity = 72/219 (32.88%), Postives = 110/219 (50.23%), Query Frame = 1
Query: 4 PAPHLGAYWNILRPHNI-PSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVH-PAALQATIVASVALTSAYTPLLKPIPLMKNF----VVAMXXXXXXXXXXXXXXXGV----AATLTPTVLTFFVIAHREILMDITDVDGDREGGVRTLPVIMGRKAALGLA 630
P + A++ ++RP NI P++ G +V+ H E L P ++ F + S +LND FDI LD++N+P RPL+TGEV A+ + LL + ++ P+ LQ I ++A YTP+LK IP +KN +VA G + L FF + EIL+D+ D+DGD++ G+ TLPVI G+ A +A
Sbjct: 53 PLQKVSAFFKLIRPSNILPTTLLTFTGGWIVNPHLFELLNTPSFIVGIFDTLLIMSTSMILNDLFDIPLDKINNPRRPLITGEVKVEEAIALS-SILLGLTEYLNFMYLPSNLQIVIHTAIANILIYTPILKKIPFIKNLSCAGLVAFSVFFAGLTANPIIDYGFNKNWGLLAINSQLIFFGSLYTEILLDMCDIDGDKQNGILTLPVIYGKNMAFEIA 270
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Match: geranylgeranylglycerol-phosphate (geranylgeranyltransferase n=1 Tax=Haloprofundus sp. SEDH52 TaxID=2876194 RepID=UPI001CCDB39C) HSP 1 Score: 99.4 bits (246), Expect = 8.270e-21 Identity = 74/213 (34.74%), Postives = 112/213 (52.58%), Query Frame = 1
Query: 31 NILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAAASVSVGSCVLNDWFDIELDRVNDPERPLVTGEVMPVHALGIGIGFLLAAVVSASAVHPAALQATIVASVALTSAYTPLLKPIPLMKNFVVAMXXXXXXXXXXXXXXXGVAATLTPT-VLTFFVIAH-----REILMDITDVDGDREGGVRTLPVIMGRKAAL--GLAAVLLS 645
++ RP N ++ L A G V++ P+VL + A + +ND+FD E+DR+N P+R + G V P AL + LAAVV+A + P A+ + +AL AYT L K +P + N VVA G AA P V+ F++A RE++ D+ DVDGDRE G+RTLP+++G + AL G+AA+ ++
Sbjct: 12 DLTRPGNTVAAALLTATGVFVAAPDAIVGGQPEVLAAVASTACATAAGNAVNDYFDHEIDRINRPDRAIPRGAVSPGGALAFSVALFLAAVVAAVVLPPLAIAIAVTNLLALV-AYTKLFKGLPGVGNAVVAYLTGSTFLF-------GAAAVGNPRDVVVLFLLAAVATFTREVVKDVEDVDGDREEGLRTLPIVVGERRALRIGVAAMAIA 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7569.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7569.1.1 >prot_H-canaliculatus_M_contigs7569.1.1 ID=prot_H-canaliculatus_M_contigs7569.1.1|Name=mRNA_H-canaliculatus_M_contigs7569.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=289bp KPAPHLGAYWNILRPHNIPSSFGLVAAGALVSSHAVEALLDPKVLLTAFAback to top mRNA from alignment at H-canaliculatus_M_contigs7569:499..5117+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7569.1.1 ID=mRNA_H-canaliculatus_M_contigs7569.1.1|Name=mRNA_H-canaliculatus_M_contigs7569.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4619bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7569:499..5117+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7569:499..5117+ >mRNA_H-canaliculatus_M_contigs7569.1.1 ID=mRNA_H-canaliculatus_M_contigs7569.1.1|Name=mRNA_H-canaliculatus_M_contigs7569.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=867bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7569:499..5117+ (Hapterophycus canaliculatus Oshoro7m male)back to top |