mRNA_H-canaliculatus_M_contigs75689.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75689.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75689.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75689.1.1 vs.
Match: Enkurin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE6_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 5.230e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    7 AHMVNLDTFGKLRRKEQMETQLKGLEKDIEKLEKTTV 117
            AHMVNLDTFGKLRRKEQMETQLKGLEKDIEKLEKT V
Sbjct:  233 AHMVNLDTFGKLRRKEQMETQLKGLEKDIEKLEKTPV 269
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75689.1.1 vs.
Match: Enkurin (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFQ2_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.360e-12
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    7 AHMVNLDTFGKLRRKEQMETQLKGLEKDIEKLEKTTV 117
            AHMVNLDTFGKLRRKEQME QLKGLEKDIEKLEKT V
Sbjct:  220 AHMVNLDTFGKLRRKEQMEKQLKGLEKDIEKLEKTPV 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75689.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Enkurin5.230e-1397.30domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Enkurin3.360e-1294.59domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75689contigH-canaliculatus_M_contigs75689:5..121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LGE6
Preferred nameENKUR
PFAMsEnkurin
Model size117
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001669,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0012505,GO:0030141,GO:0031410,GO:0031514,GO:0031982,GO:0036126,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044463,GO:0044464,GO:0097223,GO:0097228,GO:0097708,GO:0097729,GO:0099503,GO:0120025,GO:0120038
Exons1
Evalue2.67e-12
EggNOG OGs28KS9@1|root,2QT8E@2759|Eukaryota
DescriptionEnkurin, TRPC channel interacting protein
Cds size105
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.6436982-CDS-H-canaliculatus_M_contigs75689:4..1091696854093.6436982-CDS-H-canaliculatus_M_contigs75689:4..109Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75689 5..109 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.6610146-UTR-H-canaliculatus_M_contigs75689:109..1211696854093.6610146-UTR-H-canaliculatus_M_contigs75689:109..121Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75689 110..121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75689.1.1prot_H-canaliculatus_M_contigs75689.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75689 5..109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75689.1.1

>prot_H-canaliculatus_M_contigs75689.1.1 ID=prot_H-canaliculatus_M_contigs75689.1.1|Name=mRNA_H-canaliculatus_M_contigs75689.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=35bp
MVNLDTFGKLRRKEQMETQLKGLEKDIEKLEKTTV
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mRNA from alignment at H-canaliculatus_M_contigs75689:5..121-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75689.1.1 ID=mRNA_H-canaliculatus_M_contigs75689.1.1|Name=mRNA_H-canaliculatus_M_contigs75689.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75689:5..121- (Hapterophycus canaliculatus Oshoro7m male)
CAACAGGCGCACATGGTAAACCTCGACACCTTCGGGAAGCTACGCCGCAA
GGAACAGATGGAGACGCAGCTCAAGGGACTGGAGAAAGACATCGAGAAGT
TAGAAAAGACCACCGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75689:5..121-

>mRNA_H-canaliculatus_M_contigs75689.1.1 ID=mRNA_H-canaliculatus_M_contigs75689.1.1|Name=mRNA_H-canaliculatus_M_contigs75689.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=105bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75689:5..121- (Hapterophycus canaliculatus Oshoro7m male)
ATGGTAAACCTCGACACCTTCGGGAAGCTACGCCGCAAGGAACAGATGGA
GACGCAGCTCAAGGGACTGGAGAAAGACATCGAGAAGTTAGAAAAGACCA
CCGTA
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