mRNA_H-canaliculatus_M_contigs7568.5.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7568.5.1
Unique NamemRNA_H-canaliculatus_M_contigs7568.5.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7568.5.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBK9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.450e-6
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:  211 KVAVGYGFTGDESPQLANXXXXSSLQEMKAPAVDMGHLPKDCRRHVILDPGDELDYFMFGNVFHPWWVGGAGMVEM 438
            +V +G GFTG ESP+LA+    S L+ M AP +++GHLPKDC R  + D   E  + +    +   + GG G+  M
Sbjct:  255 EVFIGQGFTGYESPRLADVVWPSGLRLMSAPRMNIGHLPKDCCREFVGDVDGEAPW-LADETWPLEFAGGGGVFGM 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7568.5.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.450e-639.47protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7568contigH-canaliculatus_M_contigs7568:4546..5019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size474
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.5999079-CDS-H-canaliculatus_M_contigs7568:4545..49921696854093.5999079-CDS-H-canaliculatus_M_contigs7568:4545..4992Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7568 4546..4992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.6113262-UTR-H-canaliculatus_M_contigs7568:4992..50191696854093.6113262-UTR-H-canaliculatus_M_contigs7568:4992..5019Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7568 4993..5019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7568.5.1prot_H-canaliculatus_M_contigs7568.5.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7568 4546..4992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7568.5.1

>prot_H-canaliculatus_M_contigs7568.5.1 ID=prot_H-canaliculatus_M_contigs7568.5.1|Name=mRNA_H-canaliculatus_M_contigs7568.5.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=149bp
MLHRPLNGVTWPDTLREIRLDGDYFNQPIHVTPLPRDLEVLNLGDMFDQP
LHNVVWPKGLKKVAVGYGFTGDESPQLANVVWPSSLQEMKAPAVDMGHLP
KDCRRHVILDPGDELDYFMFGNVFHPWWVGGAGMVEMLEMGMWDIENE*
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mRNA from alignment at H-canaliculatus_M_contigs7568:4546..5019-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7568.5.1 ID=mRNA_H-canaliculatus_M_contigs7568.5.1|Name=mRNA_H-canaliculatus_M_contigs7568.5.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=474bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7568:4546..5019- (Hapterophycus canaliculatus Oshoro7m male)
CGATGTCTTGTGTGCTCACCGGGTGGAATGCTCCACAGGCCCCTCAATGG
CGTGACTTGGCCGGATACCCTCAGGGAGATCCGGCTGGACGGAGACTATT
TCAACCAACCCATTCACGTAACGCCGCTGCCACGAGATTTGGAGGTGCTG
AATCTCGGCGACATGTTTGATCAGCCCCTGCACAATGTGGTTTGGCCCAA
AGGCTTGAAGAAGGTGGCCGTAGGGTACGGCTTCACGGGGGACGAGAGCC
CCCAGCTGGCGAACGTGGTCTGGCCATCGAGTTTGCAGGAGATGAAGGCG
CCGGCGGTAGACATGGGGCACCTTCCCAAGGACTGCCGGCGGCACGTTAT
CCTTGACCCGGGAGATGAGCTCGACTACTTCATGTTCGGAAACGTTTTTC
ATCCGTGGTGGGTGGGCGGCGCCGGAATGGTCGAAATGCTCGAGATGGGT
ATGTGGGACATCGAAAATGAATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7568:4546..5019-

>mRNA_H-canaliculatus_M_contigs7568.5.1 ID=mRNA_H-canaliculatus_M_contigs7568.5.1|Name=mRNA_H-canaliculatus_M_contigs7568.5.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=447bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7568:4546..5019- (Hapterophycus canaliculatus Oshoro7m male)
ATGCTCCACAGGCCCCTCAATGGCGTGACTTGGCCGGATACCCTCAGGGA
GATCCGGCTGGACGGAGACTATTTCAACCAACCCATTCACGTAACGCCGC
TGCCACGAGATTTGGAGGTGCTGAATCTCGGCGACATGTTTGATCAGCCC
CTGCACAATGTGGTTTGGCCCAAAGGCTTGAAGAAGGTGGCCGTAGGGTA
CGGCTTCACGGGGGACGAGAGCCCCCAGCTGGCGAACGTGGTCTGGCCAT
CGAGTTTGCAGGAGATGAAGGCGCCGGCGGTAGACATGGGGCACCTTCCC
AAGGACTGCCGGCGGCACGTTATCCTTGACCCGGGAGATGAGCTCGACTA
CTTCATGTTCGGAAACGTTTTTCATCCGTGGTGGGTGGGCGGCGCCGGAA
TGGTCGAAATGCTCGAGATGGGTATGTGGGACATCGAAAATGAATGA
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