mRNA_H-canaliculatus_M_contigs75660.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75660.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75660.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75660.1.1 vs.
Match: Sugar (phosphate phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVU8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.360e-13
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 CGMAKELTERAARNHDDWMVNGRYGCIQMFDPTA 102
            CGMAKE TERAAR+H+DWMVNGRYGCIQ+FDP +
Sbjct:  267 CGMAKEGTERAARSHEDWMVNGRYGCIQLFDPAS 300
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BLAST of mRNA_H-canaliculatus_M_contigs75660.1.1 vs.
Match: Sugar (phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH09_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 6.960e-13
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 CGMAKELTERAARNHDDWMVNGRYGCIQMFDPTA 102
            CGM KE TERAAR+HDDWMVNGRYGCIQ+FDP  
Sbjct:  412 CGMEKEGTERAARSHDDWMVNGRYGCIQLFDPAT 445
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BLAST of mRNA_H-canaliculatus_M_contigs75660.1.1 vs.
Match: Sugar (phosphate phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.550e-8
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 CGMAKELTERAARNHDDWMVNGRYGCIQMFDP 96
            CGM+ ELT+ AA  HDDWMV+GRYG +Q+FDP
Sbjct:  393 CGMSAELTKAAAAAHDDWMVSGRYGVVQLFDP 424
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BLAST of mRNA_H-canaliculatus_M_contigs75660.1.1 vs.
Match: Sugar (phosphate phosphatase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYK9_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.050e-5
Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:    1 CGMAKELTERAARNHDDWMVNGRYGCIQM 87
            CGM+K++T+RAA   D WMVNG+YG IQ+
Sbjct:  268 CGMSKDMTQRAASEDDQWMVNGKYGVIQV 296
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BLAST of mRNA_H-canaliculatus_M_contigs75660.1.1 vs.
Match: Sugar (phosphate phosphatase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GCJ2_VITBC)

HSP 1 Score: 47.4 bits (111), Expect = 5.340e-5
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    1 CGMAKELTERAARNHDDWMVNGRYGCIQMFDP 96
            CGMA + T++AA +   WMVNGR+G +Q +DP
Sbjct:  434 CGMAADKTQKAAESDPKWMVNGRWGVVQFYDP 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75660.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Sugar2.360e-1382.35phosphate phosphatase n=1 Tax=Ectocarpus sp. CCAP ... [more]
Sugar6.960e-1382.35phosphate phosphatase n=1 Tax=Ectocarpus siliculos... [more]
Sugar1.550e-868.75phosphate phosphatase n=1 Tax=Tribonema minus TaxI... [more]
Sugar2.050e-562.07phosphate phosphatase n=1 Tax=Rhizochromulina mari... [more]
Sugar5.340e-553.13phosphate phosphatase n=1 Tax=Vitrella brassicafor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75660contigH-canaliculatus_M_contigs75660:355..468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FH09
Preferred nameHRT2
PFAMsDUF89
Model size114
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042221,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0097237,GO:0098754,GO:1990748
Exons1
Evalue1.14e-11
EggNOG OGsKOG3870@1|root,KOG3870@2759|Eukaryota
EC3.1.3.11
Descriptionprotein carboxyl O-methyltransferase activity
Cds size108
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.4753973-CDS-H-canaliculatus_M_contigs75660:354..4621696854093.4753973-CDS-H-canaliculatus_M_contigs75660:354..462Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75660 355..462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.4879973-UTR-H-canaliculatus_M_contigs75660:462..4681696854093.4879973-UTR-H-canaliculatus_M_contigs75660:462..468Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs75660 463..468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75660.1.1prot_H-canaliculatus_M_contigs75660.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75660 355..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75660.1.1

>prot_H-canaliculatus_M_contigs75660.1.1 ID=prot_H-canaliculatus_M_contigs75660.1.1|Name=mRNA_H-canaliculatus_M_contigs75660.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=36bp
MAKELTERAARNHDDWMVNGRYGCIQMFDPTAGST*
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mRNA from alignment at H-canaliculatus_M_contigs75660:355..468-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75660.1.1 ID=mRNA_H-canaliculatus_M_contigs75660.1.1|Name=mRNA_H-canaliculatus_M_contigs75660.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=114bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75660:355..468- (Hapterophycus canaliculatus Oshoro7m male)
TGTGGAATGGCCAAGGAGCTGACCGAGCGTGCCGCTAGAAATCACGACGA
CTGGATGGTAAACGGGCGCTACGGATGCATACAGATGTTCGACCCTACTG
CTGGTTCGACTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75660:355..468-

>mRNA_H-canaliculatus_M_contigs75660.1.1 ID=mRNA_H-canaliculatus_M_contigs75660.1.1|Name=mRNA_H-canaliculatus_M_contigs75660.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=108bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75660:355..468- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCAAGGAGCTGACCGAGCGTGCCGCTAGAAATCACGACGACTGGAT
GGTAAACGGGCGCTACGGATGCATACAGATGTTCGACCCTACTGCTGGTT
CGACTTGA
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