mRNA_H-canaliculatus_M_contigs75627.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs75627.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs75627.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Match: PCI (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPS9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.010e-13
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 1

Query:   34 RSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIED 144
            RSL HVKRKWA EEDYEF CDQLKAIRQDLTVQAIED
Sbjct:  117 RSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIED 153

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BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y1F0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.410e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1

Query:   31 QRSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIED 144
            +R+L HVK KWAAEEDY FAC+QLK+IRQDLTVQ+IED
Sbjct:  119 KRALAHVKAKWAAEEDYAFACEQLKSIRQDLTVQSIED 156

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BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Match: leukocyte (receptor cluster member 8 homolog isoform X1 n=2 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CE945B)

HSP 1 Score: 63.9 bits (154), Expect = 1.310e-10
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:    1 PVAPALLPAP--QRSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIED 144
            P A A+ P    Q+SL+HVK++W  E+DY +ACDQLK+IRQDLTVQ I D
Sbjct:  689 PAASAVRPVSVLQKSLVHVKKRWVTEQDYRYACDQLKSIRQDLTVQGIRD 738

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BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Match: SAC3_GANP (domain-containing protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7HND2_9HYME)

HSP 1 Score: 60.5 bits (145), Expect = 1.550e-10
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 1

Query:    1 PVAPALLPAP--QRSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIED 144
            P A A+ P    Q SL HVK++W  E DY +ACDQLK+IRQDLTVQ I D
Sbjct:    2 PAASAVRPVSVLQNSLAHVKKRWMNEHDYRYACDQLKSIRQDLTVQGIRD 51

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BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Match: leukocyte (receptor cluster member 8 homolog isoform X1 n=2 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC82B)

HSP 1 Score: 63.5 bits (153), Expect = 1.790e-10
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:    1 PVAPALLPAP--QRSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIED 144
            P A A+ P    Q SL HVK++W AE+DY +ACDQLK+IRQDLTVQ I D
Sbjct:  567 PAASAVRPVSVLQTSLAHVKKRWVAEQDYRYACDQLKSIRQDLTVQGIRD 616

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BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Match: leukocyte (receptor cluster member 8 homolog isoform X4 n=1 Tax=Formica exsecta TaxID=72781 RepID=UPI0011414FC7)

HSP 1 Score: 62.8 bits (151), Expect = 3.330e-10
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1

Query:   31 QRSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIED 144
            Q SL HVK++W AE+DY +ACDQLK+IRQDLTVQ I D
Sbjct:  309 QNSLAHVKKRWLAEQDYRYACDQLKSIRQDLTVQGIRD 346

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BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Match: Leukocyte (receptor cluster member 8-like protein n=1 Tax=Camponotus floridanus TaxID=104421 RepID=E2AEL1_CAMFO)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-10
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1

Query:   31 QRSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIED 144
            Q SL HVK++W AE+DY +ACDQLK+IRQDLTVQ I D
Sbjct:  467 QNSLAHVKKRWLAEQDYRYACDQLKSIRQDLTVQGIRD 504

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BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Match: Leukocyte (receptor cluster member 8-like protein n=3 Tax=Formicinae TaxID=7479 RepID=A0A0J7L308_LASNI)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-10
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1

Query:   31 QRSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIED 144
            Q SL HVK++W AE+DY +ACDQLK+IRQDLTVQ I D
Sbjct:  504 QNSLAHVKKRWLAEQDYRYACDQLKSIRQDLTVQGIRD 541

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Match: Leukocyte (receptor cluster member 8-like protein n=5 Tax=Ponerini TaxID=141711 RepID=E2C7R6_HARSA)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-10
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1

Query:   31 QRSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIED 144
            Q SL HVK++W AE+DY +ACDQLK+IRQDLTVQ I D
Sbjct:  584 QNSLAHVKKRWLAEQDYRYACDQLKSIRQDLTVQGIRD 621

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Match: leukocyte (receptor cluster member 8 homolog isoform X1 n=5 Tax=Halictidae TaxID=77572 RepID=UPI00130410B1)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-10
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1

Query:   31 QRSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIED 144
            Q SL+HVK++W A++DY +ACDQLK+IRQDLTVQ I D
Sbjct:  589 QNSLVHVKKRWVADQDYRYACDQLKSIRQDLTVQGIRD 626

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs75627.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PCI	1.010e-13	91.89	domain-containing protein n=2 Tax=Ectocarpus TaxID...	[more]
Hypothetical	1.410e-11	78.95	protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=...	[more]
leukocyte	1.310e-10	60.00	receptor cluster member 8 homolog isoform X1 n=2 T...	[more]
SAC3_GANP	1.550e-10	60.00	domain-containing protein (Fragment) n=1 Tax=Braco...	[more]
leukocyte	1.790e-10	62.00	receptor cluster member 8 homolog isoform X1 n=2 T...	[more]
leukocyte	3.330e-10	71.05	receptor cluster member 8 homolog isoform X4 n=1 T...	[more]
Leukocyte	3.340e-10	71.05	receptor cluster member 8-like protein n=1 Tax=Cam...	[more]
Leukocyte	3.340e-10	71.05	receptor cluster member 8-like protein n=3 Tax=For...	[more]
Leukocyte	3.340e-10	71.05	receptor cluster member 8-like protein n=5 Tax=Pon...	[more]
leukocyte	3.340e-10	68.42	receptor cluster member 8 homolog isoform X1 n=5 T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs75627	contig	H-canaliculatus_M_contigs75627:171..320 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	2880.D7FPS9
PFAMs	SAC3_GANP
Model size	150
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12196
KEGG Pathway	ko04144,ko04217,map04144,map04217
KEGG Module	M00412
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Evalue	1.66e-14
EggNOG OGs	KOG1861@1\|root,KOG1861@2759\|Eukaryota
Description	transcription, DNA-templated
Cds size	150
COG category	M
BRITE	ko00000,ko00001,ko00002,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854093.2818666-CDS-H-canaliculatus_M_contigs75627:170..320	1696854093.2818666-CDS-H-canaliculatus_M_contigs75627:170..320	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75627 171..320 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs75627.1.1	prot_H-canaliculatus_M_contigs75627.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs75627 171..320 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs75627:171..320+
coding sequence from alignment at H-canaliculatus_M_contigs75627:171..320+

protein sequence of mRNA_H-canaliculatus_M_contigs75627.1.1

>prot_H-canaliculatus_M_contigs75627.1.1 ID=prot_H-canaliculatus_M_contigs75627.1.1|Name=mRNA_H-canaliculatus_M_contigs75627.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=50bp
PVAPALLPAPQRSLLHVKRKWAAEEDYEFACDQLKAIRQDLTVQAIEDE*

mRNA from alignment at H-canaliculatus_M_contigs75627:171..320+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs75627.1.1 ID=mRNA_H-canaliculatus_M_contigs75627.1.1|Name=mRNA_H-canaliculatus_M_contigs75627.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=150bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75627:171..320+ (Hapterophycus canaliculatus Oshoro7m male)
CCCGTCGCCCCCGCCCTCCTCCCCGCGCCGCAGAGATCGCTGCTGCACGT
CAAGCGCAAGTGGGCCGCCGAAGAGGACTACGAATTCGCGTGCGACCAGC
TCAAGGCCATCCGCCAGGACCTGACCGTGCAGGCCATAGAGGACGAGTGA

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75627:171..320+

>mRNA_H-canaliculatus_M_contigs75627.1.1 ID=mRNA_H-canaliculatus_M_contigs75627.1.1|Name=mRNA_H-canaliculatus_M_contigs75627.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=150bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75627:171..320+ (Hapterophycus canaliculatus Oshoro7m male)
CCCGTCGCCCCCGCCCTCCTCCCCGCGCCGCAGAGATCGCTGCTGCACGT
CAAGCGCAAGTGGGCCGCCGAAGAGGACTACGAATTCGCGTGCGACCAGC
TCAAGGCCATCCGCCAGGACCTGACCGTGCAGGCCATAGAGGACGAGTGA