mRNA_H-canaliculatus_M_contigs75624.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs75624.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs75624.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AQV1_9BACT)

HSP 1 Score: 265 bits (676), Expect = 3.990e-82
Identity = 130/146 (89.04%), Postives = 142/146 (97.26%), Query Frame = 1

Query:    1 LAGRPTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWLPESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALLSVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAA 438
            L GRPTVAVAGMLNSGKTSLVSSFLSP+GQARTLRGTSNREGTHRFV+WLP+SWRKDVELWSLL+ERIGEALG PPEELA++P++AAAQYNNRSGD +LLSVALLATDPGLDE GVGLLDCPDIVSDEELGLGSP++R+KLLGRAA
Sbjct:   71 LVGRPTVAVAGMLNSGKTSLVSSFLSPTGQARTLRGTSNREGTHRFVIWLPQSWRKDVELWSLLVERIGEALGQPPEELAEEPEQAAAQYNNRSGDASLLSVALLATDPGLDEAGVGLLDCPDIVSDEELGLGSPDQRRKLLGRAA 216

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BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Match: Putative (membrane protein n=1 Tax=Rhodopirellula sallentina SM41 TaxID=1263870 RepID=M5UFB6_9BACT)

HSP 1 Score: 248 bits (633), Expect = 1.440e-75
Identity = 122/146 (83.56%), Postives = 138/146 (94.52%), Query Frame = 1

Query:    1 LAGRPTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWLPESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALLSVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAA 438
            L  RPT+AVAGMLNSGKTSLVSSFLSP+GQARTLRGTSNREGTHRFVLWLP+SWR DVELWSLL+ RIG++LG PPE+L+++PD+AA+QYNNRSGD + LSVALLATDP LDE+GVGLLDCPDIVSDEELGLGSP+ERK+LLGRAA
Sbjct:   71 LVDRPTIAVAGMLNSGKTSLVSSFLSPAGQARTLRGTSNREGTHRFVLWLPQSWRDDVELWSLLVSRIGDSLGHPPEDLSENPDQAASQYNNRSGDHSQLSVALLATDPALDELGVGLLDCPDIVSDEELGLGSPKERKELLGRAA 216

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BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhodopirellula solitaria TaxID=2527987 RepID=A0A5C5YJ96_9BACT)

HSP 1 Score: 248 bits (633), Expect = 1.600e-75
Identity = 124/146 (84.93%), Postives = 135/146 (92.47%), Query Frame = 1

Query:    1 LAGRPTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWLPESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALLSVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAA 438
            L  RPT+AVAGMLNSGKTSLVSSFLSP+GQ RTLRGTSNREGTHRFVLWLPESWR DVELWSLL+ RIG++LG PPE LA+DP EAAAQYNNRSG+ + L+VALLATDPGLDEVGVGLLDCPDIVSDEELGLGSP+ RK+LLGRAA
Sbjct:   71 LVDRPTLAVAGMLNSGKTSLVSSFLSPAGQQRTLRGTSNREGTHRFVLWLPESWRSDVELWSLLVSRIGDSLGQPPENLAEDPVEAAAQYNNRSGEESQLAVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPQRRKELLGRAA 216

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BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6BHL3_9BACT)

HSP 1 Score: 248 bits (632), Expect = 1.990e-75
Identity = 124/146 (84.93%), Postives = 134/146 (91.78%), Query Frame = 1

Query:    1 LAGRPTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWLPESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALLSVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAA 438
            L  RPT+AVAGMLNSGKTSLVSSFLSP+GQ RTLRGTSNREGTHRFVLWLPESWR DVELWSLL+ RIG++LG PPE+LA+DP  AAAQYNNR+GD A L+VALLATDPGLDEVGVGLLDCPDIVSDEELGLGSP  RK+LLGRAA
Sbjct:   71 LVDRPTIAVAGMLNSGKTSLVSSFLSPAGQLRTLRGTSNREGTHRFVLWLPESWRSDVELWSLLVSRIGDSLGQPPEDLAEDPVAAAAQYNNRAGDEAQLAVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPARRKELLGRAA 216

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BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Match: Putative (membrane protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5T9N5_9BACT)

HSP 1 Score: 248 bits (632), Expect = 2.020e-75
Identity = 121/146 (82.88%), Postives = 137/146 (93.84%), Query Frame = 1

Query:    1 LAGRPTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWLPESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALLSVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAA 438
            L  RPT+AVAGMLNSGKTSLVSSFLSP+GQARTLRGTSNREGTHRFVLWLP+SWR DVELWSLL+ RIG++LG PPE+L++DP EAAAQYNNR+GD + LSVALLATDP LD++GVGLLDCPDIVSDEELGLGSP++RK+LLGRAA
Sbjct:   71 LVDRPTIAVAGMLNSGKTSLVSSFLSPAGQARTLRGTSNREGTHRFVLWLPQSWRSDVELWSLLVSRIGDSLGHPPEDLSEDPAEAAAQYNNRTGDQSQLSVALLATDPALDDIGVGLLDCPDIVSDEELGLGSPQQRKELLGRAA 216

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BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Match: hypothetical (protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E5B4389)

HSP 1 Score: 233 bits (595), Expect = 4.150e-70
Identity = 116/143 (81.12%), Postives = 129/143 (90.21%), Query Frame = 1

Query:   10 RPTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWLPESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALLSVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAA 438
            RPT+AV+GMLNSGKTSLVSSFLSP+G+ RTLRGTSN++GTHRFVLWLP+SWR DVELWSLLI RIG++LG  PEEL+ DP+ AA QYNNR GD  LLSV LLATDPGLDEVGVGLLDCPDIVSD E GLGSPEER++LLGRAA
Sbjct:   74 RPTIAVSGMLNSGKTSLVSSFLSPAGRRRTLRGTSNKDGTHRFVLWLPQSWRADVELWSLLITRIGDSLGNSPEELSLDPEIAATQYNNREGDETLLSVPLLATDPGLDEVGVGLLDCPDIVSDAEFGLGSPEERRELLGRAA 216

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BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Match: Putative (membrane protein n=9 Tax=Rhodopirellula TaxID=265488 RepID=M5SCG2_9BACT)

HSP 1 Score: 233 bits (594), Expect = 5.030e-70
Identity = 116/143 (81.12%), Postives = 128/143 (89.51%), Query Frame = 1

Query:   10 RPTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWLPESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALLSVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAA 438
            RPT+AV+GMLNSGKTSLVSSFLS +GQ RTLRGTSNR GTHRFVLWLP+SWR DVELWSLLI RIG++LG  PEEL+ DP+ AA QYNNR GD +LLSV LL TDPGLDEVGVGLLDCPDIVSDEE GLGSPE+R++LLGRAA
Sbjct:   74 RPTIAVSGMLNSGKTSLVSSFLSEAGQRRTLRGTSNRHGTHRFVLWLPQSWRSDVELWSLLITRIGDSLGNAPEELSLDPEIAAEQYNNRDGDASLLSVPLLGTDPGLDEVGVGLLDCPDIVSDEEFGLGSPEQRRELLGRAA 216

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BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Roseimaritima ulvae TaxID=980254 RepID=A0A5B9R2A9_9BACT)

HSP 1 Score: 216 bits (549), Expect = 9.970e-64
Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 1

Query:    1 LAGRPTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWLPESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALLSVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAA 438
            LA +PTVA+AGMLNSGKTSLV+SFLSP+GQ R+LRG +NREGTHRFVLWLPE+WR D ELW LL+ RIGE LG PPE L+DD   A  QYNN +GD ALLSV L+ATDPGLDE GVGLLDCPDIVSD   G G PE R+ LLGRAA
Sbjct:   71 LAEQPTVAIAGMLNSGKTSLVASFLSPAGQRRSLRGANNREGTHRFVLWLPEAWRNDAELWGLLLSRIGETLGQPPEMLSDDLATAHRQYNNDAGDPALLSVPLVATDPGLDEAGVGLLDCPDIVSDSSFGRGDPETRRDLLGRAA 216

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BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CGW9_9BACT)

HSP 1 Score: 209 bits (531), Expect = 8.470e-61
Identity = 102/142 (71.83%), Postives = 119/142 (83.80%), Query Frame = 1

Query:   13 PTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWLPESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALLSVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAA 438
            PTVAVAGMLNSGKTSLV++FLS  G+ RTLRG  N EGTHRF+LWLP  W KD EL+ LL++RIG+A+G PPE L+DD DEA AQYNNR GD  LLSV L+ TDP LDEVG+GLLDCPDIVSDE  GLGSPE+R+++LG+AA
Sbjct:   99 PTVAVAGMLNSGKTSLVATFLSEHGRRRTLRGDGNHEGTHRFILWLPSQWEKDSELYGLLMQRIGDAIGRPPEMLSDDIDEAHAQYNNRDGDADLLSVPLVGTDPMLDEVGIGLLDCPDIVSDEAFGLGSPEQRRQVLGKAA 240

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BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517ME27_9BACT)

HSP 1 Score: 207 bits (528), Expect = 1.110e-60
Identity = 102/146 (69.86%), Postives = 118/146 (80.82%), Query Frame = 1

Query:    1 LAGRPTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWLPESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALLSVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAA 438
            LA +PTVA+AGMLNSGKTSLV+SFLS  G+   LRG +NREGTHRFVLWLP +W +D ELW LL+ RIGEALG+PPE L+ DP +A AQYNN  GD +LLSV L+ATDPGLD  GVGLLDCPDIVSD   G G PE R++LLG+AA
Sbjct:   71 LAEQPTVAIAGMLNSGKTSLVASFLSAEGKKLCLRGANNREGTHRFVLWLPSAWEQDSELWGLLLGRIGEALGSPPERLSSDPQQAHAQYNNSEGDASLLSVPLVATDPGLDAAGVGLLDCPDIVSDSSFGRGDPETRRQLLGKAA 216

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs75624.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	3.990e-82	89.04	protein n=1 Tax=Rhodopirellula pilleata TaxID=2714...	[more]
Putative	1.440e-75	83.56	membrane protein n=1 Tax=Rhodopirellula sallentina...	[more]
Uncharacterized	1.600e-75	84.93	protein n=1 Tax=Rhodopirellula solitaria TaxID=252...	[more]
Uncharacterized	1.990e-75	84.93	protein n=1 Tax=Planctomycetes bacterium Poly21 Ta...	[more]
Putative	2.020e-75	82.88	membrane protein n=2 Tax=Rhodopirellula TaxID=2654...	[more]
hypothetical	4.150e-70	81.12	protein n=2 Tax=unclassified Rhodopirellula TaxID=...	[more]
Putative	5.030e-70	81.12	membrane protein n=9 Tax=Rhodopirellula TaxID=2654...	[more]
Uncharacterized	9.970e-64	73.97	protein n=1 Tax=Roseimaritima ulvae TaxID=980254 R...	[more]
Uncharacterized	8.470e-61	71.83	protein n=1 Tax=Rubripirellula obstinata TaxID=406...	[more]
Uncharacterized	1.110e-60	69.86	protein n=1 Tax=Roseimaritima multifibrata TaxID=1...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs75624	contig	H-canaliculatus_M_contigs75624:2..454 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	595460.RRSWK_01696
Preferred name	tetP
PFAMs	EFG_C,EFG_II,EFG_IV,GTP_EFTU,NYN_YacP
Model size	453
Max annot lvl	2\|Bacteria
KEGG ko	ko:K02355
Hectar predicted targeting category	mitochondrion
Exons	1
Evalue	3.32e-76
EggNOG OGs	COG0480@1\|root,COG0480@2\|Bacteria
Description	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Cds size	453
COG category	J
BRITE	ko00000,ko03012,ko03029

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854093.2484133-CDS-H-canaliculatus_M_contigs75624:1..454	1696854093.2484133-CDS-H-canaliculatus_M_contigs75624:1..454	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75624 2..454 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs75624.1.1	prot_H-canaliculatus_M_contigs75624.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs75624 2..454 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs75624:2..454+
coding sequence from alignment at H-canaliculatus_M_contigs75624:2..454+

protein sequence of mRNA_H-canaliculatus_M_contigs75624.1.1

>prot_H-canaliculatus_M_contigs75624.1.1 ID=prot_H-canaliculatus_M_contigs75624.1.1|Name=mRNA_H-canaliculatus_M_contigs75624.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=151bp
LAGRPTVAVAGMLNSGKTSLVSSFLSPSGQARTLRGTSNREGTHRFVLWL
PESWRKDVELWSLLIERIGEALGAPPEELADDPDEAAAQYNNRSGDVALL
SVALLATDPGLDEVGVGLLDCPDIVSDEELGLGSPEERKKLLGRAALSSN
*

mRNA from alignment at H-canaliculatus_M_contigs75624:2..454+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs75624.1.1 ID=mRNA_H-canaliculatus_M_contigs75624.1.1|Name=mRNA_H-canaliculatus_M_contigs75624.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=453bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75624:2..454+ (Hapterophycus canaliculatus Oshoro7m male)
CTCGCCGGCCGTCCCACCGTCGCCGTTGCCGGAATGCTCAACAGCGGTAA
AACGAGTCTGGTCAGCTCCTTTCTGAGTCCCTCCGGCCAAGCAAGAACGC
TACGTGGGACCAGCAACCGCGAAGGCACGCACCGGTTCGTGCTCTGGTTG
CCTGAATCCTGGCGGAAAGACGTTGAACTTTGGAGCTTGTTGATTGAGCG
AATCGGAGAAGCCCTTGGTGCTCCGCCGGAAGAACTCGCCGATGATCCTG
ACGAAGCCGCCGCTCAGTACAACAATCGTTCCGGTGATGTGGCACTGCTG
TCGGTCGCGTTACTCGCAACCGATCCCGGACTCGATGAGGTCGGCGTTGG
CCTTCTCGATTGCCCCGACATTGTTTCCGACGAAGAGCTCGGCCTTGGCT
CGCCCGAAGAACGGAAGAAACTACTCGGACGCGCCGCTCTTTCAAGCAAT
TAA

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75624:2..454+

>mRNA_H-canaliculatus_M_contigs75624.1.1 ID=mRNA_H-canaliculatus_M_contigs75624.1.1|Name=mRNA_H-canaliculatus_M_contigs75624.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=453bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75624:2..454+ (Hapterophycus canaliculatus Oshoro7m male)
CTCGCCGGCCGTCCCACCGTCGCCGTTGCCGGAATGCTCAACAGCGGTAA
AACGAGTCTGGTCAGCTCCTTTCTGAGTCCCTCCGGCCAAGCAAGAACGC
TACGTGGGACCAGCAACCGCGAAGGCACGCACCGGTTCGTGCTCTGGTTG
CCTGAATCCTGGCGGAAAGACGTTGAACTTTGGAGCTTGTTGATTGAGCG
AATCGGAGAAGCCCTTGGTGCTCCGCCGGAAGAACTCGCCGATGATCCTG
ACGAAGCCGCCGCTCAGTACAACAATCGTTCCGGTGATGTGGCACTGCTG
TCGGTCGCGTTACTCGCAACCGATCCCGGACTCGATGAGGTCGGCGTTGG
CCTTCTCGATTGCCCCGACATTGTTTCCGACGAAGAGCTCGGCCTTGGCT
CGCCCGAAGAACGGAAGAAACTACTCGGACGCGCCGCTCTTTCAAGCAAT
TAA