mRNA_H-canaliculatus_M_contigs75608.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75608.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75608.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC26_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.130e-30
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQKSGTDKLRVDLWFGNRKQVCAM 204
            MKTLLATRYV+IP  VT+DVKSR+VTV GPRGELVQSFKH+NLD+QKSG +KLRVDLWFGNRKQ+  +
Sbjct:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACI 68
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BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Match: Ribosomal (protein L6, alpha-beta domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.780e-23
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQKS-GTDKLRVDLWFGNRKQVCAM 204
            MKT+LATRY+ IP  V +DVKSR+V+V+GPRG L ++FKH+NLD+QK+ G  KLRVDLWFGNRKQ+  +
Sbjct:    1 MKTVLATRYIDIPEGVKVDVKSRVVSVEGPRGSLTRNFKHLNLDIQKADGGKKLRVDLWFGNRKQLACI 69
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BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV97_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.880e-21
Identity = 42/68 (61.76%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQKSGTDKLRVDLWFGNRKQVCAM 204
            MKT+LATR+V IP  V L+VK+R V+V+GPRG+L ++FKH +LDM+  G +KLRVDLWFGNRKQ+  +
Sbjct:    8 MKTILATRFVEIPDGVQLNVKARTVSVEGPRGKLERAFKHQSLDMRLVGKNKLRVDLWFGNRKQLACI 75
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BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Match: 60S (ribosomal protein L9 n=1 Tax=Suberites domuncula TaxID=55567 RepID=Q4KTH9_SUBDO)

HSP 1 Score: 88.2 bits (217), Expect = 2.740e-20
Identity = 39/68 (57.35%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQKSGTDKLRVDLWFGNRKQVCAM 204
            M+T+LA++ V+IP +VTL VKSR+VTVKG RG L++SFKH+ +++ K G DKLR+D+WF NRKQ+  +
Sbjct:    1 MRTILASQTVTIPDNVTLSVKSRVVTVKGRRGTLIKSFKHMAIELVKVGKDKLRIDIWFANRKQLACL 68
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BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Match: 60S (ribosomal protein L9 n=2 Tax=Scolopendridae TaxID=41363 RepID=A0A4D5R972_SCOVI)

HSP 1 Score: 87.4 bits (215), Expect = 5.470e-20
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQKSGTDKLRVDLWFGNRKQVCAM 204
            MKT+ A++ V IP  VTL+VKSRIVTVKGPRG L +SF+H+ +DMQ  G +KLRV+ WFGNRK++ A+
Sbjct:    1 MKTIKASQIVMIPPGVTLNVKSRIVTVKGPRGTLRRSFRHILVDMQLVGKNKLRVEKWFGNRKELAAV 68
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BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8EMM0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.540e-19
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQKSGTDKLRVDLWFGNRKQVCAM 204
            MKT+L TRY+ IP  VT++ K+R +TV GPRG L ++FKHV+LD++    DKLR+DLWFG RKQ   +
Sbjct:    1 MKTILGTRYLDIPEGVTVECKARTITVTGPRGVLTRTFKHVSLDIRMVSKDKLRIDLWFGTRKQTATI 68
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BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY53_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.240e-19
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQKSGTDKLRVDLWFGNRKQVCAM 204
            MKT+L TR++ IP  VT+  K+R VTV GPRG+L +SFKHV LDM+     KLRVDLWFG RKQV  +
Sbjct:    1 MKTILGTRFLDIPDGVTVTCKARHVTVTGPRGKLERSFKHVQLDMRMVSPQKLRVDLWFGTRKQVATI 68
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BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Match: 60S (ribosomal protein L9 n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VN48_AMPQE)

HSP 1 Score: 84.7 bits (208), Expect = 1.370e-18
Identity = 37/68 (54.41%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQKSGTDKLRVDLWFGNRKQVCAM 204
            MKT+L+++ V+ P +VTL  K+RIVTVKGPRGEL +SF+H++ ++ K G +KLRVD+WF  RKQ+  +
Sbjct:   41 MKTILSSKVVTAPKNVTLSAKNRIVTVKGPRGELTKSFRHLSCELTKVGRNKLRVDVWFAKRKQLACL 108
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BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LGK3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.580e-18
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQK-SGTDKLRVDLWFGNRKQVCAM 204
            MK +L TRYV +P  VTL VKSR+VTV GPRGEL + F H NL+    +G  KLRVD WFGNRK+V  +
Sbjct:    1 MKQILVTRYVDVPEGVTLTVKSRVVTVTGPRGELTKKFTHQNLEFTLLNGGKKLRVDKWFGNRKEVACV 69
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Match: 60S (ribosomal protein L9 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087UT92_STEMI)

HSP 1 Score: 80.1 bits (196), Expect = 3.900e-17
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQKSGTDKLRVDLWFGNRKQVCAM 204
            MKT+LA++ V IP +V + VKSRIVTV+GPRG L + F+HV +DM+  G DKLRV  WFG RK++  +
Sbjct:    1 MKTILASQIVKIPKNVNVKVKSRIVTVRGPRGLLRRDFRHVQVDMELIGKDKLRVQKWFGIRKELATV 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75608.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.130e-3079.41protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC26... [more]
Ribosomal2.780e-2365.22protein L6, alpha-beta domain-containing protein n... [more]
Hypothetical6.880e-2161.76protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
60S2.740e-2057.35ribosomal protein L9 n=1 Tax=Suberites domuncula T... [more]
60S5.470e-2061.76ribosomal protein L9 n=2 Tax=Scolopendridae TaxID=... [more]
Hypothetical1.540e-1955.88protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Hypothetical4.240e-1960.29protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
60S1.370e-1854.41ribosomal protein L9 n=2 Tax=Amphimedon queensland... [more]
Hypothetical3.580e-1859.42protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
60S3.900e-1755.88ribosomal protein L9 (Fragment) n=1 Tax=Stegodyphu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75608contigH-canaliculatus_M_contigs75608:323..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LC26
Preferred nameRPL9
PFAMsRibosomal_L6
Model size204
Max annot lvl2759|Eukaryota
KEGG koko:K02940
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003002,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007389,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009719,GO:0009892,GO:0009941,GO:0009955,GO:0009987,GO:0010033,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048856,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904
Exons1
Evalue1.85e-31
EggNOG OGsCOG0097@1|root,KOG3255@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L6, alpha-beta domain
Ec32 orthologEc-20_004190.1
DescriptionrRNA binding
Cds size204
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.2035925-CDS-H-canaliculatus_M_contigs75608:322..5261696854093.2035925-CDS-H-canaliculatus_M_contigs75608:322..526Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75608 323..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75608.1.1prot_H-canaliculatus_M_contigs75608.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75608 323..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75608.1.1

>prot_H-canaliculatus_M_contigs75608.1.1 ID=prot_H-canaliculatus_M_contigs75608.1.1|Name=mRNA_H-canaliculatus_M_contigs75608.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=68bp
MKTLLATRYVSIPADVTLDVKSRIVTVKGPRGELVQSFKHVNLDMQKSGT
DKLRVDLWFGNRKQVCAM
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mRNA from alignment at H-canaliculatus_M_contigs75608:323..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75608.1.1 ID=mRNA_H-canaliculatus_M_contigs75608.1.1|Name=mRNA_H-canaliculatus_M_contigs75608.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75608:323..526- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGACCCTGTTAGCCACGCGCTACGTGTCTATCCCCGCTGATGTCAC
CCTTGACGTCAAGTCCCGGATCGTGACGGTGAAGGGCCCCCGCGGCGAGC
TGGTCCAGAGTTTTAAGCACGTGAACCTCGACATGCAAAAGTCGGGCACA
GACAAGCTTCGCGTGGACCTCTGGTTCGGAAACCGCAAGCAGGTATGTGC
CATG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75608:323..526-

>mRNA_H-canaliculatus_M_contigs75608.1.1 ID=mRNA_H-canaliculatus_M_contigs75608.1.1|Name=mRNA_H-canaliculatus_M_contigs75608.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75608:323..526- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGACCCTGTTAGCCACGCGCTACGTGTCTATCCCCGCTGATGTCAC
CCTTGACGTCAAGTCCCGGATCGTGACGGTGAAGGGCCCCCGCGGCGAGC
TGGTCCAGAGTTTTAAGCACGTGAACCTCGACATGCAAAAGTCGGGCACA
GACAAGCTTCGCGTGGACCTCTGGTTCGGAAACCGCAAGCAGGTATGTGC
CATG
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