mRNA_H-canaliculatus_M_contigs75587.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75587.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75587.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Match: Putative (hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.470e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   19 KKFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144
            KKFC+VNSKSARKKLV+ALFNVPRQA DLLPMYARLVAILD+
Sbjct:  892 KKFCYVNSKSARKKLVAALFNVPRQARDLLPMYARLVAILDQ 933
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BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Match: Armadillo-type (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   22 KFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144
            KFC  NSKSAR+KLV ALF  PRQ+LDLLP YARLVA LD+
Sbjct:  469 KFCHHNSKSARRKLVRALFEAPRQSLDLLPQYARLVATLDQ 509
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BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Match: ARM (repeat-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G7E1_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144
            FC+VNSK+ARK+LV ALF VPRQ +DLLP Y RL+AIL++
Sbjct:  515 FCYVNSKNARKRLVKALFGVPRQRVDLLPYYGRLIAILNQ 554
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BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168QM14_ABSGL)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144
            FC++NSK ARK+L+ AL N+PRQ +DLLP YARL+AIL++
Sbjct:  453 FCYMNSKGARKRLIKALLNIPRQRVDLLPYYARLIAILNQ 492
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BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EU12_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILD 141
            FC+VNSK+ARK+LV  L NVPRQ LDLLP YARL+ IL+
Sbjct:  551 FCYVNSKAARKRLVKTLLNVPRQRLDLLPYYARLITILN 589
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BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S8T3_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 2.730e-9
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144
            FC++NSK+ARK+LV AL NVPRQ +DLLP Y+RL+AIL +
Sbjct:  539 FCYMNSKNARKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 578
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BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162X8L0_PHYB8)

HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 LAPGEQKKFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILD 141
            L  G   +FC+VNSK+ARK+LV  L  VPRQ +DLLP YARL+A+L+
Sbjct:  489 LIDGAAVEFCYVNSKTARKRLVKTLLGVPRQRVDLLPYYARLIAVLN 535
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BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Match: Armadillo-type (protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H9L6_SYNRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144
            FC++NSK+ RK+LV AL NVPRQ +DLLP Y+RL+AIL +
Sbjct:  538 FCYINSKATRKRLVKALLNVPRQRVDLLPYYSRLIAILSQ 577
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BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Match: MIF4G (domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077W9K0_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 6.970e-9
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144
            FC++NSK+ARK+LV AL +VPRQ +DLLP YAR +AIL +
Sbjct:  549 FCYINSKAARKRLVKALLSVPRQRVDLLPYYARFIAILSR 588
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BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Match: Nonsense-mediated (mrna decay factor n=2 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RE09_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 6.980e-9
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   25 FCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK 144
            FC++NSK+ARK+LV AL +VPRQ +DLLP YAR +AIL +
Sbjct:  558 FCYINSKAARKRLVKALLSVPRQRVDLLPYYARFIAILSR 597
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75587.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Putative5.470e-1590.48hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_E... [more]
Armadillo-type5.710e-1075.61protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
ARM1.070e-970.00repeat-containing protein n=1 Tax=Hesseltinella ve... [more]
Uncharacterized2.000e-965.00protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0... [more]
Uncharacterized2.000e-971.79protein n=1 Tax=Apophysomyces ossiformis TaxID=679... [more]
Uncharacterized2.730e-967.50protein n=1 Tax=Mucor circinatus TaxID=2054153 Rep... [more]
Uncharacterized5.100e-959.57protein n=1 Tax=Phycomyces blakesleeanus (strain A... [more]
Armadillo-type5.100e-965.00protein n=1 Tax=Syncephalastrum racemosum TaxID=13... [more]
MIF4G6.970e-965.00domain-containing protein n=1 Tax=Lichtheimia ramo... [more]
Nonsense-mediated6.980e-965.00mrna decay factor n=2 Tax=Lichtheimia corymbifera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75587contigH-canaliculatus_M_contigs75587:133..276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEF3
Preferred nameUPF2
PFAMsMIF4G,Upf2
Model size144
Max annot lvl2759|Eukaryota
KEGG koko:K14327
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904
Exons1
Evalue8.97e-16
EggNOG OGsKOG2051@1|root,KOG2051@2759|Eukaryota
Descriptionnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Cds size144
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.086467-CDS-H-canaliculatus_M_contigs75587:132..2761696854093.086467-CDS-H-canaliculatus_M_contigs75587:132..276Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75587 133..276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75587.1.1prot_H-canaliculatus_M_contigs75587.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75587 133..276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75587.1.1

>prot_H-canaliculatus_M_contigs75587.1.1 ID=prot_H-canaliculatus_M_contigs75587.1.1|Name=mRNA_H-canaliculatus_M_contigs75587.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=48bp
LAPGEQKKFCFVNSKSARKKLVSALFNVPRQALDLLPMYARLVAILDK
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mRNA from alignment at H-canaliculatus_M_contigs75587:133..276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75587.1.1 ID=mRNA_H-canaliculatus_M_contigs75587.1.1|Name=mRNA_H-canaliculatus_M_contigs75587.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75587:133..276+ (Hapterophycus canaliculatus Oshoro7m male)
CTCGCCCCCGGTGAGCAGAAGAAGTTTTGCTTCGTCAACAGCAAGTCGGC
CAGAAAAAAACTGGTATCGGCGCTCTTCAACGTGCCCCGCCAGGCGCTGG
ACCTCCTCCCCATGTACGCGAGGCTGGTCGCGATTCTTGACAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75587:133..276+

>mRNA_H-canaliculatus_M_contigs75587.1.1 ID=mRNA_H-canaliculatus_M_contigs75587.1.1|Name=mRNA_H-canaliculatus_M_contigs75587.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75587:133..276+ (Hapterophycus canaliculatus Oshoro7m male)
CTCGCCCCCGGTGAGCAGAAGAAGTTTTGCTTCGTCAACAGCAAGTCGGC
CAGAAAAAAACTGGTATCGGCGCTCTTCAACGTGCCCCGCCAGGCGCTGG
ACCTCCTCCCCATGTACGCGAGGCTGGTCGCGATTCTTGACAAG
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