mRNA_H-canaliculatus_M_contigs75014.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75014.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75014.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Match: Rab8E, (RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ2_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 5.780e-11
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   52 QVQTLGVDFKLKTIVINDEEVDLQVWDTAGQ-----VTSSFFLSRRGV 180
            +VQTLGVDFKLKTIV+NDEEVDLQVWDTAGQ     +T +++    G+
Sbjct:   82 KVQTLGVDFKLKTIVLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGI 129
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BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.780e-10
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   52 QVQTLGVDFKLKTIVINDEEVDLQVWDTAGQ-----VTSSFFLSRRGV 180
            +VQTLGVDFKLKTI +NDEEVDLQVWDTAGQ     +T +++    G+
Sbjct:  972 KVQTLGVDFKLKTIFLNDEEVDLQVWDTAGQQKFHKITQAYYRGSHGI 1019
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BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0HEH7_CHEAB)

HSP 1 Score: 54.7 bits (130), Expect = 1.340e-7
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   55 VQTLGVDFKLKTIVINDEEVDLQVWDTAGQ-----VTSSFFLSRRGV 180
            + T+GVDFK++T+VIN E V LQ+WDTAGQ     +TS+++ +  GV
Sbjct:   13 ITTIGVDFKIRTVVINGERVKLQIWDTAGQERFRTITSTYYRNTHGV 59
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BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Match: Ras-related (protein Rab-35-like n=1 Tax=Gopherus evgoodei TaxID=1825980 RepID=A0A8C4YD47_9SAUR)

HSP 1 Score: 54.7 bits (130), Expect = 1.510e-7
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   55 VQTLGVDFKLKTIVINDEEVDLQVWDTAGQ-----VTSSFFLSRRGV 180
            + T+GVDFK++T+VIN E V LQ+WDTAGQ     +TS+++ +  GV
Sbjct:   22 ITTIGVDFKIRTVVINGERVKLQIWDTAGQERFRTITSTYYRNTHGV 68
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BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Match: ras-related (protein Rab-35-like isoform X2 n=1 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9BVN4_PANGU)

HSP 1 Score: 54.3 bits (129), Expect = 1.650e-7
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   55 VQTLGVDFKLKTIVINDEEVDLQVWDTAGQ-----VTSSFFLSRRGV 180
            + T+GVDFK++T+VIN E V LQ+WDTAGQ     +TS+++ +  GV
Sbjct:   39 ITTIGVDFKIRTLVINGERVKLQIWDTAGQERFRTITSTYYRNTHGV 85
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BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Match: Ras-like (GTP-binding protein YPT1 n=1 Tax=Plasmodium falciparum FCH/4 TaxID=1036724 RepID=A0A024VT01_PLAFA)

HSP 1 Score: 52.4 bits (124), Expect = 1.700e-7
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   55 VQTLGVDFKLKTIVINDEEVDLQVWDTAGQ-----VTSSFFLSRRGV 180
            + T+GVDFK+KTI I D+ + LQ+WDTAGQ     +TSS++   +G+
Sbjct:   33 ISTIGVDFKIKTIEIEDKIIKLQIWDTAGQERFRTITSSYYRGAQGI 79
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BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Match: ras-related (protein ORAB-1-like n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=UPI000703DF18)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-7
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   55 VQTLGVDFKLKTIVINDEEVDLQVWDTAGQ-----VTSSFFLSRRGV 180
            + T+GVDFK++T+VIN E V LQ+WDTAGQ     +TS+++ +  GV
Sbjct:   53 ITTIGVDFKIRTLVINGERVKLQIWDTAGQERFRTITSTYYRNTHGV 99
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Match: Ras-related (protein Rab-35-like n=9 Tax=Sauria TaxID=32561 RepID=A0A8C5EZI6_9SAUR)

HSP 1 Score: 54.7 bits (130), Expect = 1.850e-7
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   55 VQTLGVDFKLKTIVINDEEVDLQVWDTAGQ-----VTSSFFLSRRGV 180
            + T+GVDFK++T+VIN E V LQ+WDTAGQ     +TS+++ +  GV
Sbjct:   39 ITTIGVDFKIRTVVINGERVKLQIWDTAGQERFRTITSTYYRNTHGV 85
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G4Y3_HELRO)

HSP 1 Score: 54.7 bits (130), Expect = 1.850e-7
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   55 VQTLGVDFKLKTIVINDEEVDLQVWDTAGQ-----VTSSFFLSRRGV 180
            + T+GVDFK++TI++N+E V LQ+WDTAGQ     +TS+++    GV
Sbjct:   38 ITTIGVDFKIRTIIVNNERVKLQIWDTAGQERFRTITSTYYRGTHGV 84
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Match: Small (GTPase family Rab subfamily protein n=2 Tax=Gregarina niphandrodes TaxID=110365 RepID=A0A023BA03_GRENI)

HSP 1 Score: 54.7 bits (130), Expect = 1.850e-7
Identity = 23/47 (48.94%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   55 VQTLGVDFKLKTIVINDEEVDLQVWDTAGQ-----VTSSFFLSRRGV 180
            + T+GVDFK+KTI++ D++V LQ+WDTAGQ     +TSS++   +G+
Sbjct:   39 ISTIGVDFKIKTIMLEDKKVKLQIWDTAGQERFRTITSSYYRGAQGI 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75014.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rab8E,5.780e-1164.58RAB family GTPase n=1 Tax=Ectocarpus siliculosus T... [more]
Uncharacterized2.780e-1062.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.340e-751.06protein n=2 Tax=Chelonoidis abingdonii TaxID=10673... [more]
Ras-related1.510e-751.06protein Rab-35-like n=1 Tax=Gopherus evgoodei TaxI... [more]
ras-related1.650e-751.06protein Rab-35-like isoform X2 n=1 Tax=Pantherophi... [more]
Ras-like1.700e-748.94GTP-binding protein YPT1 n=1 Tax=Plasmodium falcip... [more]
ras-related1.700e-751.06protein ORAB-1-like n=1 Tax=Pelodiscus sinensis Ta... [more]
Ras-related1.850e-751.06protein Rab-35-like n=9 Tax=Sauria TaxID=32561 Rep... [more]
Uncharacterized1.850e-748.94protein n=1 Tax=Helobdella robusta TaxID=6412 RepI... [more]
Small1.850e-748.94GTPase family Rab subfamily protein n=2 Tax=Gregar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75014contigH-canaliculatus_M_contigs75014:294..473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMQ2
PFAMsRas
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K07901,ko:K07903,ko:K07976
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.47e-12
EggNOG OGsKOG0078@1|root,KOG0078@2759|Eukaryota
DescriptionGTPase activity
Cds size180
COG categoryS
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.0722058-CDS-H-canaliculatus_M_contigs75014:293..4731696854088.0722058-CDS-H-canaliculatus_M_contigs75014:293..473Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75014 294..473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75014.1.1prot_H-canaliculatus_M_contigs75014.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75014 294..473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75014.1.1

>prot_H-canaliculatus_M_contigs75014.1.1 ID=prot_H-canaliculatus_M_contigs75014.1.1|Name=mRNA_H-canaliculatus_M_contigs75014.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=60bp
GVDCRLFCCTRAVALRVQVQTLGVDFKLKTIVINDEEVDLQVWDTAGQVT
SSFFLSRRGV
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mRNA from alignment at H-canaliculatus_M_contigs75014:294..473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75014.1.1 ID=mRNA_H-canaliculatus_M_contigs75014.1.1|Name=mRNA_H-canaliculatus_M_contigs75014.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75014:294..473- (Hapterophycus canaliculatus Oshoro7m male)
GGTGTTGACTGCCGTCTGTTCTGTTGCACTCGGGCGGTGGCCCTGCGCGT
ACAGGTTCAAACCCTCGGAGTGGACTTCAAGCTGAAGACTATCGTCATCA
ACGACGAGGAGGTGGACCTGCAAGTCTGGGACACCGCCGGACAGGTGACT
TCTTCTTTTTTTCTGTCCCGAAGGGGCGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75014:294..473-

>mRNA_H-canaliculatus_M_contigs75014.1.1 ID=mRNA_H-canaliculatus_M_contigs75014.1.1|Name=mRNA_H-canaliculatus_M_contigs75014.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75014:294..473- (Hapterophycus canaliculatus Oshoro7m male)
GGTGTTGACTGCCGTCTGTTCTGTTGCACTCGGGCGGTGGCCCTGCGCGT
ACAGGTTCAAACCCTCGGAGTGGACTTCAAGCTGAAGACTATCGTCATCA
ACGACGAGGAGGTGGACCTGCAAGTCTGGGACACCGCCGGACAGGTGACT
TCTTCTTTTTTTCTGTCCCGAAGGGGCGTA
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