mRNA_H-canaliculatus_M_contigs74995.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74995.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74995.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Match: Rad21_Rec8_N (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3D1_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.540e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    4 DNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 141
            +NILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM
Sbjct:   42 ENILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 87
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BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM80_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 1.360e-16
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 ADNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 141
            AD+I+ PTVPLALR+SGHLLLGL RIYSRKVKYLM+D SEALVKI+M
Sbjct:   43 ADSIVNPTVPLALRVSGHLLLGLTRIYSRKVKYLMTDCSEALVKIKM 89
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BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Match: Mitotic (cohesin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL72_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.260e-16
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    4 DNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 141
            D+I+ PTVPLALR+SGHLLLG+VRIYSRKVKYLM D S+AL KI+M
Sbjct:   42 DSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKM 87
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BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Match: Rad21_Rec8_N (domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9U8_THAPS)

HSP 1 Score: 72.8 bits (177), Expect = 1.190e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    4 DNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 141
            D+I+ PTVPLALR+SGHLLLG+VRIYSRKV+YLM D  EA+VKI+M
Sbjct:   43 DSIVNPTVPLALRVSGHLLLGVVRIYSRKVRYLMHDCHEAMVKIKM 88
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ04_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 5.190e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    4 DNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 141
            ++I+ PTVPLALR+SGHLLLG+VRIYSRKVKYLM D  EA+VKI+M
Sbjct:   43 ESIVNPTVPLALRVSGHLLLGVVRIYSRKVKYLMHDCHEAMVKIKM 88
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Match: Rad21_Rec8_N (domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RNW5_THAOC)

HSP 1 Score: 74.7 bits (182), Expect = 6.290e-15
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    4 DNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 141
            D+I+ PTVPLALR+SGHLLLG+VRIYSRKVKYLM+D  EA+VKI+M
Sbjct:   43 DSIVNPTVPLALRVSGHLLLGVVRIYSRKVKYLMTDCHEAMVKIKM 88
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Match: Rad21_Rec8_N (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WH47_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.390e-14
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 ADNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 141
            AD+I  P VPLALR+SGHLLLG+ RIYSRKV YL +D SEALVKI+M
Sbjct:   41 ADSIANPVVPLALRVSGHLLLGVTRIYSRKVNYLFTDCSEALVKIKM 87
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IWB3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.570e-14
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    4 DNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 141
            D+I+ P VPLALR+SGHLLLG+VRIYSRKV+YLM D  EA+VKI+M
Sbjct:   43 DSIVNPAVPLALRVSGHLLLGVVRIYSRKVRYLMHDCHEAMVKIKM 88
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Match: Rad21_Rec8_N (domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DG66_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.810e-14
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 ADNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 141
            AD+I  P VPLALR+SGHLLLG+ RIYSRKV YL +D SEALVKI+M
Sbjct:   41 ADSIANPVVPLALRVSGHLLLGVTRIYSRKVNYLFTDCSEALVKIKM 87
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUA7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.490e-14
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    4 DNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 141
            D+I+ PTVPLALR+SGHLLLG+VRIYSRKVKYLM D S+AL KI+M
Sbjct:   42 DSIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKM 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74995.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rad21_Rec8_N4.540e-1997.83domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical1.360e-1682.98protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Mitotic3.260e-1678.26cohesin n=1 Tax=Nannochloropsis gaditana TaxID=725... [more]
Rad21_Rec8_N1.190e-1576.09domain-containing protein (Fragment) n=1 Tax=Thala... [more]
Hypothetical5.190e-1576.09protein (Fragment) n=1 Tax=Attheya septentrionalis... [more]
Rad21_Rec8_N6.290e-1578.26domain-containing protein n=1 Tax=Thalassiosira oc... [more]
Rad21_Rec8_N1.390e-1474.47domain-containing protein n=1 Tax=Aphanomyces eute... [more]
Hypothetical1.570e-1473.91protein (Fragment) n=1 Tax=Odontella aurita TaxID=... [more]
Rad21_Rec8_N1.810e-1474.47domain-containing protein n=1 Tax=Aphanomyces asta... [more]
Uncharacterized2.490e-1478.26protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74995contigH-canaliculatus_M_contigs74995:274..414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3D1
Preferred nameRAD21L1
PFAMsRad21_Rec8,Rad21_Rec8_N
Model size141
Max annot lvl2759|Eukaryota
KEGG koko:K06670
KEGG Pathwayko04110,ko04111,map04110,map04111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000981,GO:0001228,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005705,GO:0005721,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008278,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0010972,GO:0016043,GO:0016070,GO:0016322,GO:0016363,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030182,GO:0030893,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034991,GO:0035295,GO:0035825,GO:0042551,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044821,GO:0044877,GO:0045132,GO:0045137,GO:0045141,GO:0045143,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045876,GO:0045893,GO:0045930,GO:0045935,GO:0045944,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051276,GO:0051303,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051984,GO:0051985,GO:0060255,GO:0061458,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070197,GO:0070727,GO:0071168,GO:0071695,GO:0071704,GO:0071840,GO:0072520,GO:0080090,GO:0090068,GO:0090220,GO:0090304,GO:0097159,GO:0097240,GO:0097659,GO:0098687,GO:0098813,GO:0099086,GO:0140013,GO:0140014,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902680,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1905818,GO:1905819,GO:2000112,GO:2000816,GO:2001141,GO:2001251,GO:2001252
Exons1
Evalue7.45e-20
EggNOG OGsKOG1213@1|root,KOG1213@2759|Eukaryota
Descriptionsister chromatid cohesion
Cds size141
COG categoryS
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.6132488-CDS-H-canaliculatus_M_contigs74995:273..4141696854087.6132488-CDS-H-canaliculatus_M_contigs74995:273..414Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74995 274..414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74995.1.1prot_H-canaliculatus_M_contigs74995.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74995 274..414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74995.1.1

>prot_H-canaliculatus_M_contigs74995.1.1 ID=prot_H-canaliculatus_M_contigs74995.1.1|Name=mRNA_H-canaliculatus_M_contigs74995.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=47bp
ADNILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM
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mRNA from alignment at H-canaliculatus_M_contigs74995:274..414-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74995.1.1 ID=mRNA_H-canaliculatus_M_contigs74995.1.1|Name=mRNA_H-canaliculatus_M_contigs74995.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=141bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74995:274..414- (Hapterophycus canaliculatus Oshoro7m male)
GCAGACAACATTCTGCAGCCCACGGTGCCCCTGGCTCTCCGCATGTCGGG
GCACCTCTTGCTAGGCCTGGTCCGCATCTACTCCCGGAAAGTCAAGTACC
TCATGTCGGACGCCAGCGAGGCCCTCGTGAAGATCCAGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74995:274..414-

>mRNA_H-canaliculatus_M_contigs74995.1.1 ID=mRNA_H-canaliculatus_M_contigs74995.1.1|Name=mRNA_H-canaliculatus_M_contigs74995.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=141bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74995:274..414- (Hapterophycus canaliculatus Oshoro7m male)
GCAGACAACATTCTGCAGCCCACGGTGCCCCTGGCTCTCCGCATGTCGGG
GCACCTCTTGCTAGGCCTGGTCCGCATCTACTCCCGGAAAGTCAAGTACC
TCATGTCGGACGCCAGCGAGGCCCTCGTGAAGATCCAGATG
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