mRNA_H-canaliculatus_M_contigs7496.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7496.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7496.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7496.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R0_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 6.530e-13
Identity = 150/197 (76.14%), Postives = 156/197 (79.19%), Query Frame = 1 
Query:    1 GLGLSADDVGKMIKKHPPIVAYNIVHNLRPKLRWLQQEVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSHLSNRAVRRVLFRQPSLLGHNAXXXXXXXXXXXQDRLGMAEAAAWKFIG 591
            GLGLSADDVGKMI+KHP IVA +IVHNLRPKLR       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXX                   +SH S++ VRRVLFRQPSLLGHNA  XXXXXXXXXQDRLGM+EAAAWKFIG
Sbjct:  376 GLGLSADDVGKMIRKHPAIVACSIVHNLRPKLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPTFFTLSSXXXXXXXXXXL------------------TSHASSKVVRRVLFRQPSLLGHNADGXXXXXXXXXQDRLGMSEAAAWKFIG 554
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BLAST of mRNA_H-canaliculatus_M_contigs7496.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG1_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.630e-6
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 GLGLSADDVGKMIKKHPPIVAYNIVHNLRPKLR 99
            GLGLS DDVGKMI+K+P IVA +IVHNLRPKLR
Sbjct:  370 GLGLSTDDVGKMIRKNPAIVACSIVHNLRPKLR 402
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7496.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.530e-1376.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.630e-681.82protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7496contigH-canaliculatus_M_contigs7496:3..4522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G0R0
PFAMsmTERF
Model size762
Max annot lvl2759|Eukaryota
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.07e-13
EggNOG OGsKOG1267@1|root,KOG1267@2759|Eukaryota
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-20_001360.1
Descriptiontermination of mitochondrial transcription
Cds size762
COG categoryS
BRITEko00000,ko03012,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7496.1.1prot_H-canaliculatus_M_contigs7496.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7496 3..4522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854087.1583667-CDS-H-canaliculatus_M_contigs7496:2..1001696854087.1583667-CDS-H-canaliculatus_M_contigs7496:2..100Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7496 3..100 +
1696854087.1735904-CDS-H-canaliculatus_M_contigs7496:1217..13231696854087.1735904-CDS-H-canaliculatus_M_contigs7496:1217..1323Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7496 1218..1323 +
1696854087.1867645-CDS-H-canaliculatus_M_contigs7496:2316..24891696854087.1867645-CDS-H-canaliculatus_M_contigs7496:2316..2489Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7496 2317..2489 +
1696854087.2006388-CDS-H-canaliculatus_M_contigs7496:3509..36631696854087.2006388-CDS-H-canaliculatus_M_contigs7496:3509..3663Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7496 3510..3663 +
1696854087.2167075-CDS-H-canaliculatus_M_contigs7496:4041..41031696854087.2167075-CDS-H-canaliculatus_M_contigs7496:4041..4103Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7496 4042..4103 +
1696854087.2303433-CDS-H-canaliculatus_M_contigs7496:4353..45221696854087.2303433-CDS-H-canaliculatus_M_contigs7496:4353..4522Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7496 4354..4522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7496.1.1

>prot_H-canaliculatus_M_contigs7496.1.1 ID=prot_H-canaliculatus_M_contigs7496.1.1|Name=mRNA_H-canaliculatus_M_contigs7496.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=254bp
GLGLSADDVGKMIKKHPPIVAYNIVHNLRPKLRWLQQEVGLSRSQAVRLV
VRCPALFALGIDDNMAPKVEWLKDTLGFTRKQAARAVYANPGILLSSIEG
SLMPKISWLAEALQMDEDTVFDMIRRFPPFFTLSSEENLAPKLEWLSSHL
SNRAVRRVLFRQPSLLGHNADGNLAPKVMWLQDRLGMAEAAAWKFIGRSP
GFLTLSVSDNLEPKLWWLRDKLDVSLDGAAKMLTTYPNLFGLSIEASLEP
KLW*
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mRNA from alignment at H-canaliculatus_M_contigs7496:3..4522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7496.1.1 ID=mRNA_H-canaliculatus_M_contigs7496.1.1|Name=mRNA_H-canaliculatus_M_contigs7496.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4520bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7496:3..4522+ (Hapterophycus canaliculatus Oshoro7m male)
GGGTTGGGGCTGAGCGCAGACGATGTCGGTAAAATGATTAAGAAGCACCC
GCCGATTGTGGCCTACAACATCGTCCACAATCTACGCCCGAAGCTCCGGT
ATGGCAGTGCAGCGTGTTTTATATTTTTGCGGTGGCTTTGCACCTTTGGT
AGTTGCTGAAGTTTCGCCAGCACATAATACCTCGCACGCGCCCTATCGAA
AAAAGACTCGACCCAACGCAACAACAAGAGGCGAGTTGTGAAGATTGGAA
ATTGTATTTGTTTGTTTTGCTTGTTGCCCATTTGACGTCGTGCCTCATAC
TCGGCACGTTTCAGGGTCTCGGAGACAACTCGAAAGCGAGCGATTGGGGA
TAGTGGCCAAACCGCCTGTTTTCGTAGAATTGTGCTCTGATCCATTAAAG
GGTTAGAATCGGAACTCTCCAGGGCCTCTCATCGCGTGGCGTTGCACCGT
TATACAACTACAAGTGCTCCAGCTCAGCGATACATGTGGTCCTTACCGAG
GGTTTTTCTTCGGTGCTCGTATTCCCTCCCATGAGGGATGCTGCAATAGG
CTCGCTACCATACAGTGAAGAATCGTGTCTGACTGCAATCGGTATGTTTA
CCGTCGTGTGCATAGCGGGGGCACCCGTTTTTCACGTCCACGGCAGAAGA
GCTTGTTGAAGTTTGGAGTATTTTTAGATTGTTGCCTCGCCCTTGTCCTT
TCAAACGCCTCTCCATGTCTTGTGTTCAACCACTTGGGTCCTCAGGGAAA
CGAGACCCGACCACCTCGTTATCGTCCGCACGTACTATTAGCACCGGAGT
CGCAACGGATGGTTCAGAAGGCCAAATGAGTAACGTTGCCGCCGTCACTT
TCACGAACTGACAAGCGTGTGCTGCCAAAAGGAGCAAAGGAGAGTCGATG
CGATAGCTGCGTCCCTCCCCATCCGTTGCGCGTTGGGAAGAAAGGCTTGC
AGCGGCGGAAACATCTACGACGTGTCCGCTCCTTCCCCGTGCTCCGCTCC
TTCCCCGTGCTCCGCTAGCGTGCTATTTGCACTTACTCCGTCCTGCAGCG
CTTGCATGTCGCTGTTCCGCAAACCGGGCCCAGGTTGCATTTACATCACG
TCGGCCGAAGTTTCATGTGTTTGCTTTGACTGCTGTTCGCCGTTCGTTCG
TCCTTGTGGTGTTCTCGTGGTCGTGTCCCCCCGTCGCTGTTTTCGTTTGT
TTCTGTCTATCCCAGGTGGCTCCAGCAGGAGGTGGGGCTGTCTAGATCTC
AGGCCGTCCGCCTCGTCGTCCGTTGCCCGGCCTTGTTCGCCCTCGGTATT
GACGACAACATGGCCCCCAAGGTGCGGAGTGGGTGTTGCGGGAAAGCGGA
GGGGGCACGGCAGTCCCACAATCAAGTAAACGGGATAATCTGAAAGCAAG
TAGAAGACGGCTTCAAGGGTTGAGAGGAAAAAGAGAGAGTGGTACGGACC
AATCACCATTACAAGGCTTTTTTCGAGTGTCCGTGTACAACGGAAGCGAG
GGAGAGAACGGGCTCCGATGACGGTAGCGGTATCTCAGTTTGTCACTTGT
TCCGGGAGGAACAAGCGCGGCGGAGTTGTCAGTTCTTTTACTGCGTTCGC
CACAGGCGGGAAGGGGAAACCTTGTCCTCTAGAAGGTGAGTCTTCTTCAC
CAAAGGTTTGGAGCAGACGAAAACCTTTTACGCAGAATAACAGGTTTGTT
CTCGGCAATTTCCCACGAAGTGTCATCCCCGAGAGGCACGTGCAGCGCAC
GTATGAAATGCATCAAAATAGGCAGTAAGATTTGTAGGATGTATCGTACC
TGGAGCCTTCTTGATTCCATCCGTTGCAGGACGGCCGTAAAACCCTTAGG
TTGTCCTGCGTACGGCAACAAGGGTAGAAGCATCATTGTTATTGTTTTGA
GCAACCACGAGCAGGAGTATATTCTTGATGCGCAATCGCTCTGGTCTATT
TTTGACAGGAACATCAATATTAGACAACAGACCGTGGACCGTCCGGCCAA
TTCGTCGTCCCGGACTTCCTCGACTCAGCACCAGGCCAAACCTGTAGACA
ACTGCGAGAAATTCGGATGTCTCGTTTTGTTCTTGCGTGAGCAAGACGAT
GTACGAGAGGGACGGGGGAACACACGGACAGAAGCTCTCTCAACTGCGCT
CGCTCGACGGGTGGCAAGGGGAAACATAACGCACAAGTTTGAGAACCCCA
AAGGTACCCCCGAGGTGAATGAAGTATTCCGAACACGTTGAGATGTTGGA
GAATTCGAGTCGCGCGTAAGCAACGCCAAATAATGAAAAAAAAAACTTCA
TGTCATGGGCGCAGGTGGAATGGCTCAAGGACACCTTGGGATTCACACGG
AAGCAGGCGGCCAGAGCTGTGTACGCAAACCCCGGGATCCTTCTTAGCAG
TATCGAGGGAAGCCTGATGCCCAAGATCTCTTGGCTGGCTGAAGCGCTTC
AGATGGACGAAGATACAGTTTTCGACATGATTCGCAGGTTGTGGAATTGT
TTAACATAAGTCAACTAGCTTTCTGCAGTCGAGAATTAGTTTATGGTGCT
ACGGGAGAGTTCGATACATTGTTGGAATCAAAAAGGCGATTTGTCTGCGT
ATTGAAAGTGCGCACTTGCGGCAGTGCCAGTCTGACGACGATGCCTTTTC
ATGTTAACAAGTGGAGATGTTGGCCGCTGTGCTGGCAAAATCACGCGCAA
AGAGCTCCAAGTGTGGTAGTTCGATTGTCCCGAGGTGTGCCTCCTTGCCC
CTTCTCGTGGAAGCGGCGCATCGATTGTTTTCTCATTGCTCTTGCTCAGT
GATCGTTTCCATGCATTCTTTATCTATCTCAACTTTGTTTTCTTTGCTCA
AGTCTCCACCTGTGTGCACTTTAAAATGCCCTCAGCCTTCGACTTGATCA
TAAGAAGGAAGGCTTTCATCGTACCCGCTTTCGCTTTGTTTCGAGGAGTT
CCAATCTGTTTCGCTTCCCGTCACTACTTTTTGGGAGGAGATTCATATCA
TCAAAAACAAAGTGGTATCTTTCTCGACCCTTCCGCACAGGCCGCCCGTC
ACCTTCTTGTGAATAGGTTGTTTCAGCAAGTTTGATGAGTCTCAACGGCA
AGGCCTAGATGTTTGTACCAGGTCCCGGTGTTGCGATTTCCCTGTTTCCT
TGCGTTCGCTTGTGTCCCTCGTCGTTCAACGACGAAGCCCGTTCTCTCCG
GTATGGTATCACCATTGTCGTTGTATTTTGCTCGGCGGTTTCGTTTCCCC
CCTTTCCCCCCCGCCCTTCGTTCGCTCTATTTTTTTCTGCCCTTCTTTGT
TCCTCCGTTCCTGTTTTCCTTACTCTCGTCGCGCTTGCCTCCCTGGTATC
GAGACGTGTTCTTAGGCAACGATGCGTGCCCTTCTGCTTCGTCGGTCCCT
ACCTCTCGCGCGCGTTTCCGTTCCTGTTTATCTGTTGTTTGCCTCGCTTA
TTCGCCTTTTCACGTCTTGGACACACCTACGTGTCTGTTGCTATCCACAC
GTATAAGGTTTCCGCCCTTCTTCACGCTGAGCTCCGAAGAAAACCTTGCC
CCCAAGCTTGAATGGCTCTCCTCCCACCTCTCCAACCGGGCAGTTCGAAG
GGTGCTGTTCAGGCAGCCCTCCCTGCTCGGGCACAACGCGGACGGCAACC
TGGCTCCCAAGGTGAAGGCGGCAGCGGCAGCTCTTGTCGGGTATCGTAAA
GTGTACAGTCGTAGCTGTTCCGCGAGTCATCATCGTTTACGTCGATGTGT
TTGAGGCGTCTCCTCGGCAGGGATCATAATCCTGGGGCACCTGCCCTCTT
CCCGCTTTATTGCTAGTCCAGTTCCGTAGTGGAACTTCGAGGCGAGATGG
GCGTCCTCGAAGCCACGCTTGCGTTCTCCTCTTGCCCTTCCTTTTTAGTT
GGGCAGTGTCGGTCTTCCGAGGGGTGCGACGTTGATGGGTTGATCGGTCG
TGTGTATCGTCTTTGTTTTAGCTTGGAGGTTCGACATAACTTGGTTTTAT
GTCGTTGTTTGGTTGCACACGCTGCTCTTGTTTTGGAAGGTGATGTGGCT
ACAAGATCGTTTGGGAATGGCGGAGGCCGCAGCTTGGAAGTTCATCGGCA
GGTACTTACGGTGTCAGGATGACAATGCACGAGCTGGGTGGGAAGAAAAT
ATTGGCCTGTTTTGTTGTTGTCAATTTTTGTGCGATGATATCTCATGTGT
TTCGCGGTAAGTTTTCATGCATTGAAGCTCTAGGAGGTTCGCGATTTTCT
TGTTTTTGAAGACTTACACCAGTCACATGCAAGATTGAATCTCGGCTAGC
GTATGCGGTTGGTACGGCTCTGATTGCAATTTGTATCTTGACATTACACA
GATCGCCAGGGTTCTTGACGCTGAGTGTGTCGGACAACCTTGAGCCGAAG
CTGTGGTGGCTGCGAGACAAGCTCGACGTGAGTCTTGACGGTGCAGCCAA
GATGTTGACCACGTACCCGAACCTCTTCGGCCTGAGCATTGAGGCGTCCC
TCGAACCCAAGCTCTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7496:3..4522+

>mRNA_H-canaliculatus_M_contigs7496.1.1 ID=mRNA_H-canaliculatus_M_contigs7496.1.1|Name=mRNA_H-canaliculatus_M_contigs7496.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7496:3..4522+ (Hapterophycus canaliculatus Oshoro7m male)
GGGTTGGGGCTGAGCGCAGACGATGTCGGTAAAATGATTAAGAAGCACCC
GCCGATTGTGGCCTACAACATCGTCCACAATCTACGCCCGAAGCTCCGGT
GGCTCCAGCAGGAGGTGGGGCTGTCTAGATCTCAGGCCGTCCGCCTCGTC
GTCCGTTGCCCGGCCTTGTTCGCCCTCGGTATTGACGACAACATGGCCCC
CAAGGTGGAATGGCTCAAGGACACCTTGGGATTCACACGGAAGCAGGCGG
CCAGAGCTGTGTACGCAAACCCCGGGATCCTTCTTAGCAGTATCGAGGGA
AGCCTGATGCCCAAGATCTCTTGGCTGGCTGAAGCGCTTCAGATGGACGA
AGATACAGTTTTCGACATGATTCGCAGGTTTCCGCCCTTCTTCACGCTGA
GCTCCGAAGAAAACCTTGCCCCCAAGCTTGAATGGCTCTCCTCCCACCTC
TCCAACCGGGCAGTTCGAAGGGTGCTGTTCAGGCAGCCCTCCCTGCTCGG
GCACAACGCGGACGGCAACCTGGCTCCCAAGGTGATGTGGCTACAAGATC
GTTTGGGAATGGCGGAGGCCGCAGCTTGGAAGTTCATCGGCAGATCGCCA
GGGTTCTTGACGCTGAGTGTGTCGGACAACCTTGAGCCGAAGCTGTGGTG
GCTGCGAGACAAGCTCGACGTGAGTCTTGACGGTGCAGCCAAGATGTTGA
CCACGTACCCGAACCTCTTCGGCCTGAGCATTGAGGCGTCCCTCGAACCC
AAGCTCTGGTGA
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