mRNA_H-canaliculatus_M_contigs74913.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74913.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74913.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74913.1.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF87_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.290e-14
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 EKGEMFGEEGLVVNLATTATAVAEGPVSCVGMDRATFTE 117
            E GEMFGEE LVVNLATTATA+AEGPVSCVGMDRA FTE
Sbjct: 1024 ETGEMFGEEALVVNLATTATAIAEGPVSCVGMDRAKFTE 1062
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BLAST of mRNA_H-canaliculatus_M_contigs74913.1.1 vs.
Match: Putative (two-pore calcium channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF40_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.890e-13
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 EKGEMFGEEGLVVNLATTATAVAEGPVSCVGMDRATFTE 117
            E GEMFGEE LVVNLAT+ATA+AEGPVSCVGMDRA FTE
Sbjct:  794 ETGEMFGEEALVVNLATSATAIAEGPVSCVGMDRAKFTE 832
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74913.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Cyclic8.290e-1489.74nucleotide-binding domain-containing protein n=1 T... [more]
Putative2.890e-1387.18two-pore calcium channel (Partial) (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74913contigH-canaliculatus_M_contigs74913:215..352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LF40
PFAMsIon_trans
Model size138
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.49e-11
EggNOG OGs2E9E1@1|root,2SFS9@2759|Eukaryota
DescriptionIon transport protein
Cds size126
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.8400366-UTR-H-canaliculatus_M_contigs74913:214..2261696854086.8400366-UTR-H-canaliculatus_M_contigs74913:214..226Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs74913 215..226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.8525794-CDS-H-canaliculatus_M_contigs74913:226..3521696854086.8525794-CDS-H-canaliculatus_M_contigs74913:226..352Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74913 227..352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74913.1.1prot_H-canaliculatus_M_contigs74913.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74913 227..352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74913.1.1

>prot_H-canaliculatus_M_contigs74913.1.1 ID=prot_H-canaliculatus_M_contigs74913.1.1|Name=mRNA_H-canaliculatus_M_contigs74913.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp
MFGEEGLVVNLATTATAVAEGPVSCVGMDRATFTEVRANAHL
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mRNA from alignment at H-canaliculatus_M_contigs74913:215..352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74913.1.1 ID=mRNA_H-canaliculatus_M_contigs74913.1.1|Name=mRNA_H-canaliculatus_M_contigs74913.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=138bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74913:215..352+ (Hapterophycus canaliculatus Oshoro7m male)
GAGAAGGGGGAGATGTTCGGGGAGGAGGGCTTGGTCGTCAACCTTGCCAC
GACTGCCACCGCCGTCGCCGAGGGGCCGGTTTCCTGCGTGGGCATGGATC
GAGCGACCTTCACGGAGGTGAGAGCGAATGCACACCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74913:215..352+

>mRNA_H-canaliculatus_M_contigs74913.1.1 ID=mRNA_H-canaliculatus_M_contigs74913.1.1|Name=mRNA_H-canaliculatus_M_contigs74913.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74913:215..352+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTCGGGGAGGAGGGCTTGGTCGTCAACCTTGCCACGACTGCCACCGC
CGTCGCCGAGGGGCCGGTTTCCTGCGTGGGCATGGATCGAGCGACCTTCA
CGGAGGTGAGAGCGAATGCACACCTG
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