mRNA_H-canaliculatus_M_contigs749.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs749.1.1
Unique NamemRNA_H-canaliculatus_M_contigs749.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs749.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF29_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.050e-43
Identity = 87/169 (51.48%), Postives = 109/169 (64.50%), Query Frame = 1 
Query:    1 HWEDPTLLHMVYLDLLRTNGWAELRPLSLDLPPCACCHQDISRGQQSEETRRTSRAHAGGHRC-GIIAQGIAGTVAEEDGVHRNRNDDDGPGAEVSTLKKVVFAVNAGCALPTRRFSDVVAAAEEYLLRLDASGTDARNDGRHLRSRVLAAFCDGSSIIYYSVSSGIDT 504
            HWED  LLH+   DL+R +GW ++R   L LPPC CC +D S GQ  +++ R      G +RC G IA G+  TV EE   +R+ +  D P    +    +VFAVNAG  +PTRRFSDVVAAAEE L R+D   T+ R+  +  R  VLAAFCDGSSIIYY+VSSGIDT
Sbjct:   10 HWEDSMLLHV---DLVRKSGWTDVRSTLLHLPPCVCCRRDSSHGQPLQDSPRVPPEPGGNNRCCGKIAHGLVATVGEERNCNRDGDLGDVPVELPAASTTIVFAVNAGRTIPTRRFSDVVAAAEERL-RIDFRATEGRDQLQ--RPCVLAAFCDGSSIIYYTVSSGIDT 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs749.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.050e-4351.48protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs749contigH-canaliculatus_M_contigs749:1277..3114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size507
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptiontRNA-splicing endonuclease subunit Sen15
Ec32 orthologEc-21_006500.1
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.327349-CDS-H-canaliculatus_M_contigs749:1276..13101696854086.327349-CDS-H-canaliculatus_M_contigs749:1276..1310Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs749 1277..1310 -
1696854086.3421743-CDS-H-canaliculatus_M_contigs749:1914..20461696854086.3421743-CDS-H-canaliculatus_M_contigs749:1914..2046Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs749 1915..2046 -
1696854086.3563159-CDS-H-canaliculatus_M_contigs749:2451..27621696854086.3563159-CDS-H-canaliculatus_M_contigs749:2451..2762Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs749 2452..2762 -
1696854086.3709292-CDS-H-canaliculatus_M_contigs749:3084..30871696854086.3709292-CDS-H-canaliculatus_M_contigs749:3084..3087Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs749 3085..3087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854086.3857327-UTR-H-canaliculatus_M_contigs749:3087..31141696854086.3857327-UTR-H-canaliculatus_M_contigs749:3087..3114Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs749 3088..3114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs749.1.1prot_H-canaliculatus_M_contigs749.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs749 1277..3087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs749.1.1

>prot_H-canaliculatus_M_contigs749.1.1 ID=prot_H-canaliculatus_M_contigs749.1.1|Name=mRNA_H-canaliculatus_M_contigs749.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=160bp
MVYLDLLRTNGWAELRPLSLDLPPCACCHQDISRGQQSEETRRTSRAHAG
GHRCGIIAQGIAGTVAEEDGVHRNRNDDDGPGAEVSTLKKVVFAVNAGCA
LPTRRFSDVVAAAEEYLLRLDASGTDARNDGRHLRSRVLAAFCDGSSIIY
YSVSSGIDT*
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mRNA from alignment at H-canaliculatus_M_contigs749:1277..3114-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs749.1.1 ID=mRNA_H-canaliculatus_M_contigs749.1.1|Name=mRNA_H-canaliculatus_M_contigs749.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1838bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs749:1277..3114- (Hapterophycus canaliculatus Oshoro7m male)
CACTGGGAAGACCCGACGCTGCTGCACATGGTATGTGGGATGCCCTCTGT
GGATTTTGAAATTTGAATTTCGAAGCCACACAACACTGCAAGTACTCTTT
CGTATGAATCCCTTGTCAGAGCAGTATGATAGTCGTCTTCGTGCTGAGTC
GTGCTCATGTACATCTTGCCGTCTACCATGCTACTTGGCTTGATGCCTCA
CTCGTCCATCAACTCGAATAAGGAACAAGATGGGCAATATATAGGCCATA
AAGAACTATGAACAACCCCATGGACAAGTTCGCGAACCACCTTCGAGCGG
AGATTGTCTCTGTTGCCTGATGCATCGCACTCGTTTCGACCACCGAACTA
AGGTTTACCTGGACCTCCTCCGGACGAACGGGTGGGCCGAGCTCAGACCG
CTTTCCCTGGACCTTCCCCCCTGCGCCTGCTGCCATCAAGACATCAGCCG
TGGACAGCAAAGCGAAGAAACACGTCGGACATCACGGGCACATGCAGGCG
GTCATCGCTGCGGCATCATTGCTCAAGGAATTGCTGGGACCGTGGCAGAA
GAGGACGGCGTTCACCGCAATAGGAACGATGATGATGGCCCCGGGGCGGA
GGTATCTACGCTGAAAAAGGTGGTGTTCGCTGTGAATGCAGGGTGCGCGC
TTCCGACACGGAGGTAAGTGGAAACCCCACCTACCTTGTCCGGCAGCTTG
ATGTCTCGTCATGCATGCATACCGTTCCTGCTCTTCGATGGGATACGCGA
TTGGCATCCCTGGATACACTGCTGTAGTGTTGCGATCCCATGTGAACTGG
TTTCAGTCAAGTGATGTTACATGATAAGATTCTTCGCGGCTTGATTTACC
TTGATCTTGGTTGGGTGACCAACAGAACCAGTCATTAGTTTTACCGATTA
CTACTTCGAACGGTCCTACGCGACCCACGCTGGCTGAAGGGATGCACAAC
ACCTAGCAGTCAAGACGACCGCCTCGCTGCTGCTTCGACGCACACCGCTG
CATGTTCACGGGCATAGAACCGTTACCTTCGTTCCTCCTTTTAAAATCGT
GCGTTACCTGCCCTGCAGATTCAGCGACGTCGTGGCGGCCGCAGAAGAGT
ACCTATTGCGGTTGGACGCCAGCGGCACAGACGCTCGCAACGACGGACGT
CATCTTCGATCCCGCGTTTTGGCGGCATTCTGTGATGGATCCAGCATCAT
GTGAGGATATCCTTGAATTGTACGTGCAAGGTGTGATCTAGAAGTATCCT
GACAACCCGCACGACACTTTCGGGCACCGTAGGAGAGGGTCTGCAGAGCT
GACGGAACCTTGAAGGACGGACATAGCCTGGGTACATCGTAATACCCGGG
GGGCATCTCTAGGCACACCTTGGGTACTCTTGAAAACCTCTGGACTGTAT
GGGACCCGGCTCGGAAGTCTAGGCCCATGGATATCACAGAACTTTAGTGC
AGAACTTTAGTGTGCGGTACTGGAGGGCACGCCTGACTCAGGTAGGTTTG
GGGTTTGGCTTGCAACACCCGGTCAAGTACCGTGGGCATACAAAAATCGG
CAATCTAAAGGACCACACCTTTTCCATTTCCGGCCGTTTTGTCGGTCACG
ACACGGCACCGTTTGGCTACCCACCTTCGTTGCCATACGTATTGACAGCG
GCCTCACTTCTCGGGTTCGAAGCTTTCCGCGCACGTACTGCTGTCATGTT
TGCCCCAGCCACCCTCACGCATTGACGATTCGCAGTTGTCGGCATCCCTT
CCTGACGCCGCCTACCTTTGCCCATCTGCCTGCCCTTTGCCCGTCTGCCT
CTAGCTACTATTCCGTGTCCAGCGGGATTGATACGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs749:1277..3114-

>mRNA_H-canaliculatus_M_contigs749.1.1 ID=mRNA_H-canaliculatus_M_contigs749.1.1|Name=mRNA_H-canaliculatus_M_contigs749.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=480bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs749:1277..3114- (Hapterophycus canaliculatus Oshoro7m male)
ATGGTTTACCTGGACCTCCTCCGGACGAACGGGTGGGCCGAGCTCAGACC
GCTTTCCCTGGACCTTCCCCCCTGCGCCTGCTGCCATCAAGACATCAGCC
GTGGACAGCAAAGCGAAGAAACACGTCGGACATCACGGGCACATGCAGGC
GGTCATCGCTGCGGCATCATTGCTCAAGGAATTGCTGGGACCGTGGCAGA
AGAGGACGGCGTTCACCGCAATAGGAACGATGATGATGGCCCCGGGGCGG
AGGTATCTACGCTGAAAAAGGTGGTGTTCGCTGTGAATGCAGGGTGCGCG
CTTCCGACACGGAGATTCAGCGACGTCGTGGCGGCCGCAGAAGAGTACCT
ATTGCGGTTGGACGCCAGCGGCACAGACGCTCGCAACGACGGACGTCATC
TTCGATCCCGCGTTTTGGCGGCATTCTGTGATGGATCCAGCATCATCTAC
TATTCCGTGTCCAGCGGGATTGATACGTGA
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