mRNA_H-canaliculatus_M_contigs7485.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7485.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7485.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM20_ECTSI)

HSP 1 Score: 475 bits (1222), Expect = 1.340e-162
Identity = 239/287 (83.28%), Postives = 260/287 (90.59%), Query Frame = 1
Query:    1 GEWAEEMRVKDELISNLKRQLVTLGEQPMEEIVTLEEAKKRLREAIDALMSGDASVEMEHALEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVPPDIFHADLDGLRGGGLSPALAKRIFDRKVLWLVRAPQGMVSKTHVVELKSKFLANDLDVVESRALHACLPSKFENDSDGAKTGWRAGFRQRLKELLGKEDGGHLKPAEVRRPVYKGMAQGPFDPDAAAEEQETMRSSAFDASEKPVVGGKLEASKIAVIGEGLASKLKPGPTSERSMADLK 861
            GEWAE++R+KDELIS L+RQL  LGEQP+EE+VTLEEAKKRLREAIDALM+GDAS EME ALEKWDKYVTNHPDHIKEQAAEEQAWE  NEPKNNEAL LMKTFVPPDIFHA LDGLRGGGL+PALAKR+FDRKVLWL+RAP GMVSKTHVVELKSK+LANDLDVVESRALHACLPS FEND+DGAKT WRAGFR+RLKELL KE  G LKPAE+RRPVYK + +GPFDPDAAAEEQETMRSSAFDASEKPVVGGKL+AS IAVIG+GL +KLK GP     ++D K
Sbjct:   21 GEWAEQVRIKDELISTLRRQLTALGEQPIEEVVTLEEAKKRLREAIDALMAGDASAEMELALEKWDKYVTNHPDHIKEQAAEEQAWEAANEPKNNEALHLMKTFVPPDIFHAGLDGLRGGGLTPALAKRMFDRKVLWLIRAPIGMVSKTHVVELKSKYLANDLDVVESRALHACLPSTFENDADGAKTAWRAGFRKRLKELLDKEAAGQLKPAELRRPVYKDIEKGPFDPDAAAEEQETMRSSAFDASEKPVVGGKLKASAIAVIGDGLGAKLKTGPPPLDPISDTK 307          
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMF6_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.670e-52
Identity = 101/245 (41.22%), Postives = 155/245 (63.27%), Query Frame = 1
Query:   40 ISNLKRQLVTLGEQPMEEIVTLEEAKKRLREAIDALMSGDASVEMEHALEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVPPDIFHADLDGLRGGGLSPALAKRIFDRKVLWLVRAPQGMVSKTHVVELKSKFLANDLDVVESRALHACLPSKFENDSDGAKTGWRAGFRQRLKELLGKEDGGHLKPAEVRRPVYKGMAQGP--FDPDAAAEEQETMRSSAFDASEKPVVGGK 768
            I  LK QL   G +P++E+V+LEEAK+RL+ A++ ++ G+   +++   +KWD+Y+  HP+H +EQ    + WE +N  KN +ALR ++TFVPPDI++A LDGL+  G+   LAKR++DRK+LW  R+   +++KTH  +LK KF    LD+ E RA+ A LP  F+NDS G K  WR  F  +LKE++ +E+   L  A+    +++  A  P  FDPDA +   +T++  AFD    P V  +
Sbjct:  660 IEMLKLQLKNAGVKPIDEVVSLEEAKQRLKRAVEQMIGGNEDAQVD--FDKWDEYIRCHPEHKEEQQRLAREWEEKNREKNEQALRALRTFVPPDIYYATLDGLKLRGVQTPLAKRLWDRKILWWCRSEPSIIAKTHAADLKVKFAFQGLDLRELRAVSAMLPQTFDNDSTGDKKKWRENFMTKLKEMVQQEEQNRLPAAQQ---IHRTYADHPELFDPDAESVLVQTVKGGAFDKVVAPPVSSR 899          
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6X4_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.080e-49
Identity = 92/220 (41.82%), Postives = 143/220 (65.00%), Query Frame = 1
Query:   19 MRVKDELISNLKRQLVTLGEQPMEEIVTLEEAKKRLREAIDALMSGDASVEMEHA-LEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVPPDIFHADLDGLRGGGLSPALAKRIFDRKVLWLVRAPQGMVSKTHVVELKSKFLANDLDVVESRALHACLPSKFENDSDGAKTGWRAGFRQRLKELLGKEDGGHLKPAEVRRPVYKGMAQ 675
            ++ K+  I+ L +QL + G+Q + E+V+L++A+  L+EA+  LMSG+ +++   A  +KWD++V NHP+ I ++ A+ +AW++   P N  AL+LM+TFVPP+I+ + L  L+  GL   L KR++++KVLWL RAP+  +++ HV +L  K+    LD++E RA+ A LP KFEND D  K GWR     RLKEL+  ED G L     R   YK +A+
Sbjct:  239 LKEKETHIAMLIKQLESHGDQAITEVVSLDKAQASLQEALGQLMSGEGNLDAAQAEFDKWDRFVRNHPEFIAQEQAKREAWDQAQAPLNTSALQLMRTFVPPNIWSSSLTTLKDSGLPSGLVKRLWEKKVLWLTRAPKDFIARIHVADLNMKYSIQGLDLMELRAVWAALPEKFENDGDDRKAGWRLKIHDRLKELVSSEDRGSLSGPLRRHASYKSVAR 458          
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCH3_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.200e-44
Identity = 86/219 (39.27%), Postives = 131/219 (59.82%), Query Frame = 1
Query:   13 EEMRVKDELISNLKRQLVTLGEQPMEEIVTLEEAKKRLREAIDALMSGDASVEMEHALEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVPPDIFHADLDGLRGGGLSPALAKRIFDRKVLWLVRAPQGMVSKTHVVELKSKFLANDLDVVESRALHACLPSKFENDSDGAKTGWRAGFRQRLKELLGKEDGGHLKPAEVRRPVYKGM 669
            EE     + ++ LK QL  +G +P+E  VTL+ A+++++EA+  LM+GD   E +  +EKWD  +  +P++ +EQ  + + W  +N+ KN EA R M+  VPPDI    L  L   GL  ALAKR++D+K+LW++R     ++  H  +L++K+    LD++E RA+   LP  FEND DG K  WR  FRQ+L+EL  KE+   L   E R   YK +
Sbjct:   65 EETATLQKQVAMLKHQLKAVGAEPVE-CVTLDVAREKMQEAVQRLMAGDEMAEKD--IEKWDTAIKMNPEYQQEQEEKARKWAEDNKEKNEEACRTMRGLVPPDIKQCSLKTLMERGLPRALAKRLWDKKILWMLRMHPLDIALIHQADLRAKYPNQGLDIIEMRAVWTVLPEDFENDGDGKKAEWRFNFRQKLEELTTKEEQNRLARNEKRNNAYKDL 280          
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G2R7_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.740e-41
Identity = 99/263 (37.64%), Postives = 143/263 (54.37%), Query Frame = 1
Query:   28 KDELISNLKRQLVTLGEQPMEEIVTLEEAKKRLREAIDALMSGDASVEMEHALEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVPPDIFHADLDGLRGGGLSPALAKRIFDRKVLWLVRAP-QGMVSKTHVVELKSKFLANDLDVVESRALHACLPSKFENDSDGAKTGWRAGFRQRLKELLGKEDGGHLKPAEVRRPVYKGMAQGPFDPD-----AAAEEQETMRSSAFDASEKPVVGGKLEASKIAVIG 798
            K  LI  L  QL     +P+ E+V LEEAK+R++ A+  ++ GD  +E E   +KWD Y+  HPD+++++A +   W    +   + AL+LM +++P DIF+     L   G+SPALA+RIFD+KVLW +R P Q  ++K H  +L  K+    LD+VE++A+ A +P KFEND  G K  WR     +L+EL  K D G L   EVR   Y     G FDP+     A  E +  +       S K V G K     +  IG
Sbjct:  154 KGTLIQLLMSQLKGANIEPILEVVGLEEAKERMKNAVSLMLQGD--IEAEAVFDKWDTYIRAHPDYVRDEARKLAEWTESTKRDCDIALQLMLSYIPGDIFNISKAELINRGVSPALARRIFDKKVLWWLRLPNQSTIAKMHGADLTYKYSMQGLDLVETQAVWAVVPDKFENDRSGEKEQWRQNCLLKLRELTKKRDKGTLAKKEVRAAAYNDQI-GLFDPETGLRVAGLENKPVVEMRPKTPSRKSVGGLKSSNDLMGAIG 413          
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q7_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.290e-41
Identity = 85/208 (40.87%), Postives = 125/208 (60.10%), Query Frame = 1
Query:   40 ISNLKRQLVTLGEQPMEEIVTLEEAKKRLREAIDALMSGDASVEMEHALEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVPPDIFHADLDGLRGGGLSPALAKRIFDRKVLWLVRAPQGMVSKTHVVELKSKFLANDLDVVESRALHACLPSKFENDSDGAKTGWRAGFRQRLKELLGKEDGGHLKPAEVRRPVYK 663
            I+ LK+QL + G+  +E  V+LE AK+R+++A+  LM+GD S E +  +++WDK +  HPD+ KEQ    + WE +N   N +AL LM+ FVPPDI  + +  +   G+    AKRI+  KVL  VR     + K H+ +L++ +    LDVVE RA+ A +P +F+ DSD  K  WR  F Q+L+EL  KE  G L   E R P +K
Sbjct:   48 IALLKKQLASTGQVALE-FVSLETAKERMQQAVTKLMAGDESAEKD--IDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHPDDIKKVHIADLQTTYSNQGLDVVEMRAVWAAMPQEFDLDSDAKKAQWRLFFCQKLQELTTKEASGMLSRNERRNPAWK 252          
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2P6FUZ7_9RHOB)

HSP 1 Score: 145 bits (367), Expect = 4.680e-38
Identity = 79/210 (37.62%), Postives = 119/210 (56.67%), Query Frame = 1
Query:   34 ELISNLKRQLVTLGEQPMEEIVTLEEAKKRLREAIDALMSGDASVEMEHALEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVPPDIF-HADLDGLRGGGLSPALAKRIFDRKVLWLVRAPQGMVSKTHVVELKSKFLANDLDVVESRALHACLPSKFENDSDGAKTGWRAGFRQRLKELLGKEDGGHLKPAEVRRPVY 660
            E I  LK QL   G +P+ EI + E+ K +LR A++A++  D+ + ++  +EKWD+++ NHP  IKEQ  E + WE   +    +A    K ++P DIF +A +  L   G+S  LA RI   + LWLVR  +  V+  H+ +LK K+    LD++E RAL++CLP KF+ND +  K  W+    Q LK+L  KE    L    +R   Y
Sbjct:   77 EHIELLKSQLENAGIRPISEITSYEDGKSQLRSALEAVIKEDSFLNLKE-VEKWDEFIKNHPQFIKEQKEENKIWEANAQVAAEKARNEQKKYIPEDIFKNASIINLNNYGVSKNLATRIMRNRALWLVRMDKKDVANVHIADLKFKYSFTGLDIIELRALYSCLPDKFDNDXNNEKEDWKNSLIQSLKDLENKEKNNTLPKRLIRNSAY 285          
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3I4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.150e-37
Identity = 83/216 (38.43%), Postives = 122/216 (56.48%), Query Frame = 1
Query:   91 EIVTLEEAKKRLREAIDALMSGDASVEMEHALEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVPPDIFHADLDGLRGGGLSPALAKRIFDRKVLWLVRAPQGMVSKTHVVELKSKFLANDLDVVESRALHACLPSKFENDSDGAKTGWRAGFRQRLKELLGKEDGGHLKPAEVRRPVYKGMAQGPFDPDAAAEEQETMRSSAFD 738
            E VTLE+A+ R R A++A    DA++        W   +  HP++I+ Q  E +AWE + +PK +EAL +M+TF+PP      LD L   GLS ALA+RI   + L LVR     ++K H  +L   + ++ LD++E RA++A LP+ F+ D DG K  WR   R +LK L  +E  G L   E+R   Y   + GPFDP  A + +  + S A+D
Sbjct:    2 EYVTLEKAENRFRAALEAENYDDAAL--------WGDIIKVHPEYIEAQRRENEAWEIKIKPKCDEALTIMRTFIPPTPTKWTLDKLVEAGLSLALARRIRRMRALHLVRLHPDDIAKIHAADLTHTYASSGLDIIELRAMYAVLPASFDADPDGKKAKWRDAVRDKLKGLETRESAGTLTKNEIRAGAYANTS-GPFDPHEAVQRRSFVTSQAYD 208          
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVV0_AURAN)

HSP 1 Score: 148 bits (373), Expect = 1.270e-36
Identity = 88/250 (35.20%), Postives = 132/250 (52.80%), Query Frame = 1
Query:    1 GEWAEEMRVKDELISNLKRQLVTLGEQPMEEIVTLEEAKKRLREAIDALMSGDAS------------VEMEHALEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVPPDIFHADL--DGLRGGGLSPALAKRIFDRKVLWLVRAPQGMVSKTHVVELKSKFLANDLDVVESRALHACLPS-KFENDSDGAKTGWRAGFRQRLKELLGKEDGGHLKPAEVRRPVYK---GMAQGPFDPDA 696
            G    ++  K+  I+ L +QL   G+  + E+V L EAK RL+ A+  ++ GD +             E E  +EKWD ++T+HP+H++ Q A  + W   N     +A R +KT VPPD+F +    + L   GLS ALA+R+++R  LWL+RA     ++ H  +L+ KF   DLD+ E RAL+  +    FEND+   K  WR G  +RL+  +  +D G L   + R   Y    G   GPFD DA
Sbjct:  281 GSLRAQLEQKEVQIAMLTKQLEAAGQSAITEVVPLAEAKHRLQAALAVIVGGDGASKRRASERQLTQAEAEAEMEKWDTFITHHPEHVEAQRAARERWWDANGEACADAARALKTCVPPDVFASGTSRERLVAAGLSEALAQRVYERPALWLLRAEDAFAARVHDADLRGKFAFEDLDLRELRALYGRVRDLAFENDAARRKDAWRDGLLERLQSRVAADDAGSLDKRKRRHAAYPADDGEVLGPFDADA 530          
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0L2P5_9ZZZZ)

HSP 1 Score: 137 bits (344), Expect = 1.360e-34
Identity = 75/210 (35.71%), Postives = 120/210 (57.14%), Query Frame = 1
Query:   34 ELISNLKRQLVTLGEQPMEEIVTLEEAKKRLREAIDALMSGDASVEMEHALEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVPPDIFH-ADLDGLRGGGLSPALAKRIFDRKVLWLVRAPQGMVSKTHVVELKSKFLANDLDVVESRALHACLPSKFENDSDGAKTGWRAGFRQRLKELLGKEDGGHLKPAEVRRPVY 660
            E I  LK QL   G +P+ E+V+ E AK+ L +A+      D S E    +E+WD+++ NHP +I+E+  +E+AW+ +N  KN EAL + +  +P +I+  A +D L   GL   LA R+   +VLWLV      ++  H+ +L+ K+    LD++E RAL+AC+P KFE+D  G K  W +  R++L +++ +E    L     R   Y
Sbjct:   83 EQIEVLKSQLNNAGIKPLSEMVSYETAKEYLTKALKNASESD-SYENIKEVERWDEFIKNHPKYIEEEKEKEEAWKNDNFLKNIEALEVQRNIIPNNIYSGASVDILMEKGLKKELAVRLMRNRVLWLVHMNPNEIAPIHLADLRFKYSFTGLDLIEMRALYACMPEKFEHDDTGEKMQWLSSVREKLSDMINQEKNNTLIARLKRNSAY 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7485.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
Uncharacterized1.340e-16283.28protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM20... [more]
Hypothetical2.670e-5241.22protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical1.080e-4941.82protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical2.200e-4439.27protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Hypothetical1.740e-4137.64protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized5.290e-4140.87protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
Uncharacterized4.680e-3837.62protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1... [more]
Hypothetical1.150e-3738.43protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Uncharacterized1.270e-3635.20protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Uncharacterized1.360e-3435.71protein n=1 Tax=viral metagenome TaxID=1070528 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7485contigH-canaliculatus_M_contigs7485:265..2210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FM20
Model size870
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.2e-158
EggNOG OGs2ENCT@1|root,2SRUE@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010340.1
Cds size852
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854085.8290122-CDS-H-canaliculatus_M_contigs7485:264..4711696854085.8290122-CDS-H-canaliculatus_M_contigs7485:264..471Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7485 265..471 -
1696854085.8408535-CDS-H-canaliculatus_M_contigs7485:741..10021696854085.8408535-CDS-H-canaliculatus_M_contigs7485:741..1002Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7485 742..1002 -
1696854085.8627946-CDS-H-canaliculatus_M_contigs7485:1356..16501696854085.8627946-CDS-H-canaliculatus_M_contigs7485:1356..1650Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7485 1357..1650 -
1696854085.8747942-CDS-H-canaliculatus_M_contigs7485:2102..21921696854085.8747942-CDS-H-canaliculatus_M_contigs7485:2102..2192Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7485 2103..2192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854085.8936014-UTR-H-canaliculatus_M_contigs7485:2192..22101696854085.8936014-UTR-H-canaliculatus_M_contigs7485:2192..2210Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7485 2193..2210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7485.1.1prot_H-canaliculatus_M_contigs7485.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7485 265..2192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7485.1.1

>prot_H-canaliculatus_M_contigs7485.1.1 ID=prot_H-canaliculatus_M_contigs7485.1.1|Name=mRNA_H-canaliculatus_M_contigs7485.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=284bp
MRVKDELISNLKRQLVTLGEQPMEEIVTLEEAKKRLREAIDALMSGDASV
EMEHALEKWDKYVTNHPDHIKEQAAEEQAWERENEPKNNEALRLMKTFVP
PDIFHADLDGLRGGGLSPALAKRIFDRKVLWLVRAPQGMVSKTHVVELKS
KFLANDLDVVESRALHACLPSKFENDSDGAKTGWRAGFRQRLKELLGKED
GGHLKPAEVRRPVYKGMAQGPFDPDAAAEEQETMRSSAFDASEKPVVGGK
LEASKIAVIGEGLASKLKPGPTSERSMADLKKDS
back to top

mRNA from alignment at H-canaliculatus_M_contigs7485:265..2210-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7485.1.1 ID=mRNA_H-canaliculatus_M_contigs7485.1.1|Name=mRNA_H-canaliculatus_M_contigs7485.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1946bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7485:265..2210- (Hapterophycus canaliculatus Oshoro7m male)
GGAGAGTGGGCTGAAGAAATGAGAGTCAAGGACGAGCTGATCTCGAACCT GAAAAGGCAGCTCGTGACGCTGGGAGAGCAACCGATGGAAGAGATTGTGA CTCTGGAGGTGAGGCAAGGCACAAGTTGACTGACCTCGCACGCGACACGC TCGATTCGAACATTCCAGCGCTTGTCGGACAATCCTCTGGTCTTGATCGA CTGAGTGATGTTTTCATGTCACGCGGTTCTTTTGGTTTGCCCACCAGATT GCTATCTTAGTATCAACACATCGGAAGGTACTTCCTCTTGCAGGGAAGAA AAGACGCAGCATTCTTTGTCCTTTCGATCCCCGCTTTTTTTCAAGGAAAC GACTGCCTCGAAGTTATCGGTAATCGACGATCTCATGTTGCGAAGACCGA GGATCCATTGGAAGTGGTACCTGCCGTTGAAAACCTGCACAAGTACACAC AGCAGCGGCTTGGATCGAAATCGTCAACTGGTTGGCGGGGACCTATCGCA CAGGGATATTAATGACAGGTACTTGCGCGCGGCCCTTTGCTCTTTTCACC TGCGTTAAAGGAAGCAAAGAAGCGTCTGAGAGAGGCTATAGACGCGCTTA TGTCCGGGGATGCGTCTGTGGAAATGGAACACGCCCTTGAGAAGTGGGAC AAGTATGTAACGAACCATCCCGACCACATCAAGGAGCAGGCCGCCGAAGA ACAGGCTTGGGAAAGGGAGAACGAGCCGAAAAACAATGAAGCCCTCCGTT TGATGAAGACTTTTGTACCGCCTGATATCTTCCACGCTGATCTGGATGGC CTGCGGGGTGGGGGGCTATCGCCGGCCCTCGCGAAGAGAATTTTCGATCG CAAGGTAACACGACATTTCGGGAGAAGGGTATGCCGCTGGCCTGCGTCGG TACATCCCAGAGGTCCGTTGGACTGGAATCTCCATGTGCTTTTGAGGGGG CATATAAATGCATGTCACCCCGAGGAAAATCTGATGTTCAAAGGAGATGT TCGATGAAAGAGCCGTCGCACGCCGTCGCCATTTTCGTTTAGTATCTGCA CATGCATACATGCATGCATGAGGTACCAGTAGAGCCGGCGAGGAAGGTCG ACCCGGGGTCTCATCCCTCGATTCCAGGCGGTATCATTACCGTTACAACG GGAGTCTAAAATGTTCGACTCGATCCCTCTCTCGACGCACCGTGGCTGTT TCCGCCAGGTGCTTTGGCTTGTTCGGGCCCCGCAAGGAATGGTATCAAAA ACTCACGTCGTCGAACTCAAGAGCAAGTTTTTGGCCAACGATCTCGACGT CGTTGAGAGTCGGGCTCTCCACGCGTGCCTGCCATCCAAGTTCGAGAATG ATTCTGATGGAGCGAAGACGGGATGGAGGGCCGGCTTTCGACAGCGCTTG AAGGAACTCTTAGGCAAAGAAGATGGCGGTCATCTCAAGCCCGCAGAAGT TAGGCGCCCCGTCTACAAGGTGATGTACTTGGGCAAGAGAGAAGGCCATT GCGTCGAATCTGGCGGACACAGAAGATGAGCTATACTGATGTTCAGCAGT GATTTGAACCAACAACGCGTGCGTGTTTGTTTCGCTTGTTGATCTTGCCT GTTCTCGCGTTCTCGAGCGGAAAATTGCCTAATGTACGGTCCCAGACAAC ACGCAGACGCTTCCAACCACCCGTGCTACCCATTGGTGCATGTTCTGCAT CCCCCTCTACGCCGTTTCGTGACTGGACGAAACGGGTAGGGCATGGCGCA AGGACCGTTCGACCCTGATGCAGCTGCTGAAGAACAGGAAACCATGCGCA GCAGCGCGTTTGACGCGTCGGAGAAGCCTGTGGTAGGGGGGAAACTAGAA GCGTCCAAGATAGCCGTAATCGGAGAGGGACTCGCGTCGAAGCTGAAGCC GGGTCCGACCTCGGAAAGATCCATGGCTGATTTGAAGAAGGATTCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7485:265..2210-

>mRNA_H-canaliculatus_M_contigs7485.1.1 ID=mRNA_H-canaliculatus_M_contigs7485.1.1|Name=mRNA_H-canaliculatus_M_contigs7485.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=852bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7485:265..2210- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGAGTCAAGGACGAGCTGATCTCGAACCTGAAAAGGCAGCTCGTGAC
GCTGGGAGAGCAACCGATGGAAGAGATTGTGACTCTGGAGGAAGCAAAGA
AGCGTCTGAGAGAGGCTATAGACGCGCTTATGTCCGGGGATGCGTCTGTG
GAAATGGAACACGCCCTTGAGAAGTGGGACAAGTATGTAACGAACCATCC
CGACCACATCAAGGAGCAGGCCGCCGAAGAACAGGCTTGGGAAAGGGAGA
ACGAGCCGAAAAACAATGAAGCCCTCCGTTTGATGAAGACTTTTGTACCG
CCTGATATCTTCCACGCTGATCTGGATGGCCTGCGGGGTGGGGGGCTATC
GCCGGCCCTCGCGAAGAGAATTTTCGATCGCAAGGTGCTTTGGCTTGTTC
GGGCCCCGCAAGGAATGGTATCAAAAACTCACGTCGTCGAACTCAAGAGC
AAGTTTTTGGCCAACGATCTCGACGTCGTTGAGAGTCGGGCTCTCCACGC
GTGCCTGCCATCCAAGTTCGAGAATGATTCTGATGGAGCGAAGACGGGAT
GGAGGGCCGGCTTTCGACAGCGCTTGAAGGAACTCTTAGGCAAAGAAGAT
GGCGGTCATCTCAAGCCCGCAGAAGTTAGGCGCCCCGTCTACAAGGGCAT
GGCGCAAGGACCGTTCGACCCTGATGCAGCTGCTGAAGAACAGGAAACCA
TGCGCAGCAGCGCGTTTGACGCGTCGGAGAAGCCTGTGGTAGGGGGGAAA
CTAGAAGCGTCCAAGATAGCCGTAATCGGAGAGGGACTCGCGTCGAAGCT
GAAGCCGGGTCCGACCTCGGAAAGATCCATGGCTGATTTGAAGAAGGATT
CT
back to top