mRNA_H-canaliculatus_M_contigs7482.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7482.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7482.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7482.1.1 vs.
Match: Rad60-SLD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L3_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.130e-49
Identity = 92/134 (68.66%), Postives = 107/134 (79.85%), Query Frame = 1 
Query:    1 SGPPVTLKVRVEGGKMFKVGTTMETKFSAFMEAFNEKVGVPSERASEAIFRFEGDRLNPEGSPEGEDMEQDDMIDVKFPHDLMGSIQAAPTELSLVAPKKKRVPRKPASKGKGASRGGGSTTAAALAATATPLG 402
            SG P+TLK+RVEGGK F V TT  TKFSAFMEAFNEKVG+P ERASE +F+F+GD+LNP+G+PEGEDME +++ID KFP D+M S+QAAPTELSL APKKK+VPRK   KGK A R    TTAAAL     PLG
Sbjct:  148 SGAPITLKLRVEGGKAFMVTTTTGTKFSAFMEAFNEKVGIPQERASECVFKFDGDKLNPDGTPEGEDMEPEEIIDAKFPADVMNSVQAAPTELSLAAPKKKKVPRKVPGKGKAAVR---KTTAAALXXXXKPLG 278
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BLAST of mRNA_H-canaliculatus_M_contigs7482.1.1 vs.
Match: Rad60-SLD (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 9.670e-43
Identity = 79/106 (74.53%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:    1 SGPPVTLKVRVEGGKMFKVGTTMETKFSAFMEAFNEKVGVPSERASEAIFRFEGDRLNPEGSPEGEDMEQDDMIDVKFPHDLMGSIQAAPTELSLVAPKKKRVPRK 318
            SG P+TLK+RVEGGK F V TT  TKFSAFMEAFNEKVG+P ERASE +F+F+GD+LNP+G+PEGEDME +++ID KFP DLM S+QAAPTELSL APKKK VPRK
Sbjct:  319 SGAPITLKLRVEGGKAFMVTTTTGTKFSAFMEAFNEKVGIPQERASEGVFKFDGDKLNPDGTPEGEDMESEEIIDAKFPADLMNSVQAAPTELSLGAPKKK-VPRK 423
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7482.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Rad60-SLD1.130e-4968.66domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Rad60-SLD9.670e-4374.53domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7482contigH-canaliculatus_M_contigs7482:7..2361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size528
Hectar predicted targeting categoryother localisation
Exons3
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854085.705952-CDS-H-canaliculatus_M_contigs7482:6..751696854085.705952-CDS-H-canaliculatus_M_contigs7482:6..75Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7482 7..75 +
1696854085.7192104-CDS-H-canaliculatus_M_contigs7482:979..11021696854085.7192104-CDS-H-canaliculatus_M_contigs7482:979..1102Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7482 980..1102 +
1696854085.7311075-CDS-H-canaliculatus_M_contigs7482:2025..23611696854085.7311075-CDS-H-canaliculatus_M_contigs7482:2025..2361Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7482 2026..2361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7482.1.1prot_H-canaliculatus_M_contigs7482.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7482 7..2361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7482.1.1

>prot_H-canaliculatus_M_contigs7482.1.1 ID=prot_H-canaliculatus_M_contigs7482.1.1|Name=mRNA_H-canaliculatus_M_contigs7482.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=176bp
SGPPVTLKVRVEGGKMFKVGTTMETKFSAFMEAFNEKVGVPSERASEAIF
RFEGDRLNPEGSPEGEDMEQDDMIDVKFPHDLMGSIQAAPTELSLVAPKK
KRVPRKPASKGKGASRGGGSTTAAALAATATPLGRAAAATRSTRSGGARG
SRSGSRAASAAAAAAAAEPEIIVLD*
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mRNA from alignment at H-canaliculatus_M_contigs7482:7..2361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7482.1.1 ID=mRNA_H-canaliculatus_M_contigs7482.1.1|Name=mRNA_H-canaliculatus_M_contigs7482.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2355bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7482:7..2361+ (Hapterophycus canaliculatus Oshoro7m male)
TCGGGCCCGCCGGTCACTCTCAAAGTCCGCGTTGAGGGTGGAAAGATGTT
TAAGGTCGGCACGACCATGGTAAGAGGTGCCGGTGTCAGGGTGTTGGTGT
TGATTTGGCGGCGTGGTGGAGGGGGGTTGCGTTGGTGGAGGTGGTCGGGG
TCGGGGTCGGCGTTGGCGTTGGCGTTGATCCGGGGGCGTGGCAGGGAGAG
ATGGCGACGAAACGGGAAAGGCCTCGTCGTCGGTGTTGACGCGGCTGCGC
GAGGGAGGAAAGTAGGGGTGTTGAAGGTGGACGGCGACAGGAAAAACGTG
TCGGTGTTTGGGGTCGGCATAGCGTCGGCGTTGGTGCTGATGTGGCGGCA
CCAGAGAGCAAGGTAGTGGTGTTGACTGTGAAAGGTGACAGGCGAAAAGT
GTTGGTTGTTGGGGTCGGCATCCCGGGAATGCCGTCGTCGTGAATGGCGC
AGAAGCCATGTTGGGGTTGGTGTTGGGTGCTGGTAATGTGGTTGCGTGGC
GACGTTGCGGCGAGATGCGAAGGTTTCCTTCCATCTGTGTGTGCATCGCC
TGACGGCGGAGTCAGGTTGAGATGTAGTCGTCTTGGGTGCTGGCACTCGA
ATTGCATGATGCCGTCAAGGCGAGACAGGATTGGTTCTACAAGTACGACG
AGAATACTTCATTGCCGGCGCTGGTGTTGGTCTCGTCAAAGCGCTACACG
TAGCCCCAGTGCCCCTTGCTTAAGGGACTAGGCAGCGTGCAGCGTGCACG
CTGCAAGCAACTTCTGACGCCAGTCTCCAAAGCGCGTAGTACACCACCGT
TTCGTCTTCTGTTTCCTTGGTTCTGCTGACCGACCGATGCGAATGGGTCT
TGTTGTGTCGGCTGTGGCTGCATCGACCGACCGACCGACTGATCGACCGA
ACGCCTTGCCTCTTGTTTCTCGTTTTTTGTGTTCCTCTTTTGGCGTGAAA
CCAATGCGCAACGAATCTCTCAGGAGACGAAGTTTTCCGCGTTCATGGAG
GCTTTCAACGAGAAGGTCGGGGTGCCCTCCGAGCGCGCCAGCGAAGCGAT
ATTCAGGTTCGAAGGCGACAGACTCAACCCCGAAGGTTCCCCCGAGGTGA
GATGAACGGACGCGACCGGCCTGGACGGGAATAGGACAAAAATACGCGGA
GGGCATGACGGGGGGAGGGCAAAGTCGGATGGGATTGTCCGTGGTGAATG
TTCGTCACGTCGTTTCCCTGGACGGACGTCGCCCTTGCGTCGCTCTAGGG
TGAAATCGGTCGAACGGAGTGCGGTGCGTAACTTGCGCTGCAAGTTGTTT
GTTTTGTACAGAACTGTGCGCCACTAGCGGAGGTACACCGGGAGGTTCTC
TGGCACCTGTTTTTTTTTGTTGTCGGTCTGTGTCGCTGTTCGTCGTCCGG
CTCGTGGTTGTTGCGGCTGTAGAATGCGTCACTGTCGATGCAGATGGTCG
ACGGATACTTCGAAGTACGCTAGTAATGCACGTCGCGACATCGAGACTGA
TATTCGCCGCCAATTGTCCACGTGCGTGGGGGTGTTGGTGTGTGTCCTTT
TGGAGATACCGATCGAGTCGCCTGGCGGTCAATCTGCAGTCATTGGTTAT
AAGCGGGGCGGTAAGAAAAGCTGTAAAGCTCTTCCTGACATGCGCACGCG
CGCGTGTGTGTGTTCGTGTGTGTACGTCAGTGATGCATTCCTCCCGCCTC
CCTCGTAATTAGTTAGCACCGACCGTGTTGAGCCGTGGGTGTTGAGTGTT
GAGCGTGACGGTTTTTGTCATGGTTTTCTCGTCGCTTGTCGCTTGCGCCT
ACAGCGTTTGTCCTGTGCTACTTGCAGTGTCTCTTCTCTCTCTTCCAAGA
ATCCCTAGCAACCGCCGTTCTCTTTGGGACGACCAGTGAGACGCCCGTGT
CTCAGCGGGGCAGCAGTGTGCGTGCGTAGTTGTTCCTCCCCTACAACTGC
TGTATCCCCTTCAAACCTCTCGCCGACACCACAACGCCAACGAATTGGAC
CGCTGAACGAAAAACACAGGGCGAAGACATGGAGCAGGACGACATGATCG
ACGTCAAGTTCCCCCACGACCTCATGGGCAGCATCCAGGCGGCGCCGACC
GAGCTCTCACTGGTCGCTCCGAAAAAGAAAAGGGTCCCACGGAAGCCAGC
AAGCAAGGGGAAAGGTGCCTCCCGCGGCGGCGGGAGCACCACGGCGGCGG
CGTTGGCCGCGACGGCGACGCCCTTGGGACGGGCCGCCGCGGCGACACGG
TCTACGCGAAGCGGAGGGGCGAGGGGGTCGCGAAGCGGCAGCCGGGCGGC
TTCGGCTGCGGCTGCGGCGGCTGCGGCGGAGCCGGAGATCATCGTGCTAG
ATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7482:7..2361+

>mRNA_H-canaliculatus_M_contigs7482.1.1 ID=mRNA_H-canaliculatus_M_contigs7482.1.1|Name=mRNA_H-canaliculatus_M_contigs7482.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=528bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7482:7..2361+ (Hapterophycus canaliculatus Oshoro7m male)
TCGGGCCCGCCGGTCACTCTCAAAGTCCGCGTTGAGGGTGGAAAGATGTT
TAAGGTCGGCACGACCATGGAGACGAAGTTTTCCGCGTTCATGGAGGCTT
TCAACGAGAAGGTCGGGGTGCCCTCCGAGCGCGCCAGCGAAGCGATATTC
AGGTTCGAAGGCGACAGACTCAACCCCGAAGGTTCCCCCGAGGGCGAAGA
CATGGAGCAGGACGACATGATCGACGTCAAGTTCCCCCACGACCTCATGG
GCAGCATCCAGGCGGCGCCGACCGAGCTCTCACTGGTCGCTCCGAAAAAG
AAAAGGGTCCCACGGAAGCCAGCAAGCAAGGGGAAAGGTGCCTCCCGCGG
CGGCGGGAGCACCACGGCGGCGGCGTTGGCCGCGACGGCGACGCCCTTGG
GACGGGCCGCCGCGGCGACACGGTCTACGCGAAGCGGAGGGGCGAGGGGG
TCGCGAAGCGGCAGCCGGGCGGCTTCGGCTGCGGCTGCGGCGGCTGCGGC
GGAGCCGGAGATCATCGTGCTAGATTGA
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