mRNA_H-canaliculatus_M_contigs74509.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74509.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74509.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs74509.1.1 vs.
Match: CAP10 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTE1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.320e-17
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   49 QVNSEGDVEIDEPRDLFTQENFKNFECDWADKQETAFFR 165
            QVN EG+VEIDEPRDLFTQENFK FECDWADKQETAFFR
Sbjct:   10 QVNKEGEVEIDEPRDLFTQENFKKFECDWADKQETAFFR 48
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BLAST of mRNA_H-canaliculatus_M_contigs74509.1.1 vs.
Match: CAP10 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ47_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.920e-17
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   49 QVNSEGDVEIDEPRDLFTQENFKNFECDWADKQETAFFR 165
            QVN EG+VEIDEPRDLFTQENFK FECDWADKQETAFFR
Sbjct:  361 QVNKEGEVEIDEPRDLFTQENFKKFECDWADKQETAFFR 399
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BLAST of mRNA_H-canaliculatus_M_contigs74509.1.1 vs.
Match: Glycosyl (transferase family 90-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS34_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-8
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   67 DVEIDEPRDLFTQENFKNFECDWADKQETAFFR 165
            +VEIDEPRDLFTQENF  F+C W DK +TAFFR
Sbjct:  390 EVEIDEPRDLFTQENFVKFKCAWEDKVDTAFFR 422
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74509.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
CAP104.320e-1792.31domain-containing protein n=1 Tax=Ectocarpus silic... [more]
CAP106.920e-1792.31domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Glycosyl1.770e-875.76transferase family 90-domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74509contigH-canaliculatus_M_contigs74509:169..333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTE1
PFAMsGlyco_transf_90
Model size165
Max annot lvl2759|Eukaryota
KEGG koko:K13667
KEGG ReactionR09315
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.08e-18
EggNOG OGsKOG2458@1|root,KOG2458@2759|Eukaryota
Descriptionglucosyltransferase activity
Cds size165
COG categoryS
CAZyGT90
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854082.6608412-CDS-H-canaliculatus_M_contigs74509:168..3331696854082.6608412-CDS-H-canaliculatus_M_contigs74509:168..333Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74509 169..333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74509.1.1prot_H-canaliculatus_M_contigs74509.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74509 169..333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74509.1.1

>prot_H-canaliculatus_M_contigs74509.1.1 ID=prot_H-canaliculatus_M_contigs74509.1.1|Name=mRNA_H-canaliculatus_M_contigs74509.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=55bp
CCCFSCRRCLSCFRLFQVNSEGDVEIDEPRDLFTQENFKNFECDWADKQE
TAFFR
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mRNA from alignment at H-canaliculatus_M_contigs74509:169..333-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74509.1.1 ID=mRNA_H-canaliculatus_M_contigs74509.1.1|Name=mRNA_H-canaliculatus_M_contigs74509.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74509:169..333- (Hapterophycus canaliculatus Oshoro7m male)
TGCTGTTGTTTTTCATGTCGTCGATGCTTGTCGTGCTTTCGTCTTTTTCA
GGTGAACAGCGAAGGCGACGTAGAGATCGACGAGCCACGAGACCTCTTCA
CCCAGGAGAACTTCAAGAACTTCGAGTGTGACTGGGCGGACAAACAAGAG
ACGGCGTTCTTCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74509:169..333-

>mRNA_H-canaliculatus_M_contigs74509.1.1 ID=mRNA_H-canaliculatus_M_contigs74509.1.1|Name=mRNA_H-canaliculatus_M_contigs74509.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=165bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74509:169..333- (Hapterophycus canaliculatus Oshoro7m male)
TGCTGTTGTTTTTCATGTCGTCGATGCTTGTCGTGCTTTCGTCTTTTTCA
GGTGAACAGCGAAGGCGACGTAGAGATCGACGAGCCACGAGACCTCTTCA
CCCAGGAGAACTTCAAGAACTTCGAGTGTGACTGGGCGGACAAACAAGAG
ACGGCGTTCTTCAGG
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