mRNA_H-canaliculatus_M_contigs7449.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7449.1.1 vs.
Match: Smc4 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD0_ECTSI) HSP 1 Score: 230 bits (586), Expect = 1.450e-74 Identity = 116/151 (76.82%), Postives = 128/151 (84.77%), Query Frame = 1
Query: 61 VAVATGCFRLQSVKVAGFRSWKETQTISFAQNGLSCITGPNGSGKSTLLNAILFGLGENANQIGARQTADLASAADAEAELLFRSVSSGVSDVKVSSAVSRATGQRTYAFNGQKIPKHRQDHKFDHFLRTRLGIATGNPFWRVSQDGIHRL 513
+A T ++LQSV V+GF+SW T + F +GLSCITGPNGSGKSTLLNAILFGLGENANQ+GA+Q A+LASAA AE ELLFR VS GVSD KVSSAVSRA GQRTYAFNGQ++PKHR FDHFLRTRLGIATGNPFWRVSQDGIHRL
Sbjct: 27 IAAGTARYKLQSVTVSGFKSWTSTARVVFGHDGLSCITGPNGSGKSTLLNAILFGLGENANQLGAKQNAELASAAHAEVELLFRGVSRGVSDAKVSSAVSRANGQRTYAFNGQRLPKHR----FDHFLRTRLGIATGNPFWRVSQDGIHRL 173
BLAST of mRNA_H-canaliculatus_M_contigs7449.1.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 6.660e-14 Identity = 53/160 (33.12%), Postives = 79/160 (49.38%), Query Frame = 1
Query: 88 LQSVKVAGFRSWKETQTISF-AQNGLSCITGPNGSGKSTLLNAILFGLGENANQIGARQTADLASAADAEAELLFRSVSSGVS----------------DVKVSSAVSRATGQRTYAFNGQKIPKHRQDHKFDHFLRTRLGIATGNPFWRVSQDGIHRLV 516
L++V++ FRS+ + + G++ + GPNG+GKSTLL AILF LG A +DLASA E F + +V V + V +ATG+R Y GQK+P+ R FD L LG++ PFW + Q+G+ ++
Sbjct: 21 LKTVRIEAFRSFVAPCIVEVDTKPGVTAVVGPNGAGKSTLLQAILFALGGKAASTRGASASDLASAPTLHVECTFVTTXXXXXXXXXXXXXXXXXXXXXEVSVGTRVCKATGERAYLVQGQKVPRKR----FDGALLA-LGLSVDAPFWHIRQNGMQSIL 175
BLAST of mRNA_H-canaliculatus_M_contigs7449.1.1 vs.
Match: Chromosome (partition protein Smc n=1 Tax=Gammaproteobacteria bacterium TMED34 TaxID=1986761 RepID=A0A1Z8RA52_9GAMM) HSP 1 Score: 57.8 bits (138), Expect = 1.380e-6 Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query: 82 FRLQSVKVAGFRSWKETQTISFAQNGLSCITGPNGSGKSTLLNAILFGLGENA--NQIGARQTADLASAAD-------AEAELLFRSVSSGV-------SDVKVSSAVSRATGQRTYAFNGQKIPKHRQDHKFDHFLRTRLGIATGNPFWRVSQDGIHRLV 516
RLQ++K+AGF+S+ ++ T+SF N L + GPNG GKS +++A+ + +GE++ N G T + + A A EL+F + V S+V V VSR GQ TY N + R+ D FL T LG + + + Q I +L+
Sbjct: 1 MRLQAIKLAGFKSFVDSTTVSFPSN-LCAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGESMTDVIFNGASSRKPVGQASIELIFDNADGRVGGEFAAYSEVSVKRQVSR-DGQSTYFLNKNRC---RRKDITDLFLGTGLGPRS---YSIIEQGMISQLI 153
BLAST of mRNA_H-canaliculatus_M_contigs7449.1.1 vs.
Match: Chromosome (partition protein Smc n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A424L8A1_9GAMM) HSP 1 Score: 55.8 bits (133), Expect = 6.350e-6 Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query: 82 FRLQSVKVAGFRSWKETQTISFAQNGLSCITGPNGSGKSTLLNAILFGLGEN-ANQIGARQTADL----ASA----ADAEAELLFRSVSSGV-------SDVKVSSAVSRATGQRTYAFNGQKIPKHRQDHKFDHFLRTRLGIATGNPFWRVSQDGIHRLV 516
RLQ++K+AGF+S+ ++ T+SF N L + GPNG GKS +++A+ + +GE+ A + AD+ AS+ A EL+F + V S+V V VSR GQ Y N + R+ D FL T LG + + + Q I +L+
Sbjct: 1 MRLQAIKLAGFKSFVDSTTVSFPSN-LCAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGESMADVIFNGASSRKPVGQASIELIFDNADGRVAGEFAAYSEVSVKRQVSR-DGQSXYFLNKNRC---RRKDITDLFLGTGLGPRS---YSIIEQGMISQLI 153
BLAST of mRNA_H-canaliculatus_M_contigs7449.1.1 vs.
Match: Chromosome (partition protein Smc n=1 Tax=Candidatus Aquirickettsiella gammari TaxID=2016198 RepID=A0A370CKH9_9COXI) HSP 1 Score: 53.5 bits (127), Expect = 3.950e-5 Identity = 50/161 (31.06%), Postives = 83/161 (51.55%), Query Frame = 1
Query: 82 FRLQSVKVAGFRSWKETQTISFAQNGLSCITGPNGSGKSTLLNAILFGLGEN-ANQIGARQTADLA--------SAADAEAELLFRSVS-------SGVSDVKVSSAVSRATGQRTYAFNGQKIPKHRQDHKFDHFLRTRLGIATGNPFWRVSQDGIHRLV 516
RL+S+K+AGF+S+ + T++F N L+ I GPNG GKS +++AI + +GE+ A Q+ + D+ + A EL F + S + + + ++R GQ Y+ NG + R+D + D FL T LG + + + Q I R+V
Sbjct: 1 MRLESIKLAGFKSFVDPTTVAFPSN-LTAIVGPNGCGKSNIIDAIRWVMGESSAKQLRGQSLDDVIFNGCKTRQALGKASIELNFDNADGKLGGQYSSYTQIAIRREMTRE-GQSIYSLNGTRC--RRRDIR-DIFLGTGLGPRS---YAIIEQGMISRIV 153
BLAST of mRNA_H-canaliculatus_M_contigs7449.1.1 vs.
Match: Chromosome (partition protein Smc n=2 Tax=Rickettsiella TaxID=59195 RepID=A0A2Z5UU10_9COXI) HSP 1 Score: 53.1 bits (126), Expect = 5.350e-5 Identity = 50/161 (31.06%), Postives = 82/161 (50.93%), Query Frame = 1
Query: 82 FRLQSVKVAGFRSWKETQTISFAQNGLSCITGPNGSGKSTLLNAILFGLGEN-ANQIGARQTADLA--------SAADAEAELLFRSVSSGV-------SDVKVSSAVSRATGQRTYAFNGQKIPKHRQDHKFDHFLRTRLGIATGNPFWRVSQDGIHRLV 516
RL+S+K+AGF+S+ + T++F N L+ I GPNG GKS +++AI + +GE+ A Q+ + D+ A EL F + G+ + + + ++R GQ Y NG + R+D + D FL T LG + + + Q I R+V
Sbjct: 1 MRLESIKLAGFKSFVDPTTLAFPSN-LTAIVGPNGCGKSNIIDAIRWVMGESSAKQLRGQSLDDVIFNGCTTRKPLGQAAIELNFDNSDGGLGGQYSSYAQISIRREITRE-GQSIYYLNGSRC--RRRDIR-DIFLGTGLGPRS---YAIIEQGMISRVV 153
BLAST of mRNA_H-canaliculatus_M_contigs7449.1.1 vs.
Match: Chromosome (partition protein Smc n=1 Tax=Candidatus Rickettsiella isopodorum TaxID=1225476 RepID=A0A1J8P5X9_9COXI) HSP 1 Score: 52.8 bits (125), Expect = 7.250e-5 Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 1
Query: 82 FRLQSVKVAGFRSWKETQTISFAQNGLSCITGPNGSGKSTLLNAILFGLGEN-ANQIGARQTADLA--------SAADAEAELLFRSVSSGV-------SDVKVSSAVSRATGQRTYAFNGQKIPKHRQDHKFDHFLRTRLGIATGNPFWRVSQDGIHRLV 516
RL+S+K+AGF+S+ + T++F N L+ I GPNG GKS +++AI + +GE+ A Q+ + D+ A EL F + + + + + + ++R GQ Y+ NG + R+D + D FL T LG + + + Q I R+V
Sbjct: 1 MRLESIKLAGFKSFVDPTTVAFPSN-LTAIVGPNGCGKSNIIDAIRWVMGESSAKQLRGQSLDDVIFNGCHTRKPLGKASIELNFDNSDASLGGQYNSYTQISIRREITRE-GQSIYSLNGTRC--RRRDIR-DIFLGTGLGPRS---YAIIEQGMISRIV 153
BLAST of mRNA_H-canaliculatus_M_contigs7449.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9KZZ3_9ACAR) HSP 1 Score: 52.4 bits (124), Expect = 9.570e-5 Identity = 43/149 (28.86%), Postives = 71/149 (47.65%), Query Frame = 1
Query: 88 LQSVKVAGFRSWKETQTISFAQNGLSCITGPNGSGKSTLLNAILFGLGENANQIGARQTADLASAADAEAELL-FRSVSSGVSDVKVSSAVSRATGQRTYA------FNGQKIPKHRQDHKFDHFLRTRLGIATGNPFWRVSQDGIHRL 513
++ + ++GFRS++ET TIS + I G NG GKS +LNAI F L + N + A Q L + + ++ LL F + SD ++ V+ +R F KI H + L T G + NP++ + Q ++ +
Sbjct: 3 IKKITISGFRSYRETNTISGLSARHNVIIGGNGCGKSNVLNAIQFVLSDEFNGLNANQRQQLINESHSQRLLLAFVEIVVDNSDRRIPLDVNDIAFRRQIGLKKDQYFMNNKIVTHSD---IVNMLET-AGFSRSNPYYIIKQGKVNEM 147 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7449.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7449.1.1 >prot_H-canaliculatus_M_contigs7449.1.1 ID=prot_H-canaliculatus_M_contigs7449.1.1|Name=mRNA_H-canaliculatus_M_contigs7449.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=173bp MKRQGNRNGGEGAGKIVGGKVAVATGCFRLQSVKVAGFRSWKETQTISFAback to top mRNA from alignment at H-canaliculatus_M_contigs7449:2029..5148- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7449.1.1 ID=mRNA_H-canaliculatus_M_contigs7449.1.1|Name=mRNA_H-canaliculatus_M_contigs7449.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3120bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7449:2029..5148- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7449:2029..5148- >mRNA_H-canaliculatus_M_contigs7449.1.1 ID=mRNA_H-canaliculatus_M_contigs7449.1.1|Name=mRNA_H-canaliculatus_M_contigs7449.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7449:2029..5148- (Hapterophycus canaliculatus Oshoro7m male)back to top |