prot_H-canaliculatus_F_contig14998.3747.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig14998.3747.1
Unique Name	prot_H-canaliculatus_F_contig14998.3747.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	96

Homology

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BLAST of mRNA_H-canaliculatus_F_contig14998.3747.1 vs. uniprot
Match: D7G8F2_ECTSI (Decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F2_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.530e-10
Identity = 45/97 (46.39%), Postives = 54/97 (55.67%), Query Frame = 0

Query:    4 RGCELLVILMACELMQPSSAFVDGSTRARTGCLGVGQRRVASGTIVFSNRNR----AATAQVCCFAMETAQPSAGLDQDSTPLVDALAEAAGNVRSP 96
            +  EL+ +LM C L  PSS+F+    R       V        T VF  R R     A  +V C   +T + SAGL+QDSTPLVDALAEAAGNVRSP
Sbjct:    2 KRSELICVLMVCALACPSSSFLLDCIRTANTAPAV--------TAVFLGRGRRPRPTAVQRVRCLRTQT-RASAGLNQDSTPLVDALAEAAGNVRSP 89

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig14998.3747.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig14998.3747.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G8F2_ECTSI	4.530e-10	46.39	Decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..15
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..96
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..23
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..23 score: 0.737

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig14998	contig	H-canaliculatus_F_contig14998:1671..1958 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig14998.3747.1	mRNA_H-canaliculatus_F_contig14998.3747.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig14998 1645..1958 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig14998.3747.1 ID=prot_H-canaliculatus_F_contig14998.3747.1|Name=mRNA_H-canaliculatus_F_contig14998.3747.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=96bp
MGFRGCELLVILMACELMQPSSAFVDGSTRARTGCLGVGQRRVASGTIVF
SNRNRAATAQVCCFAMETAQPSAGLDQDSTPLVDALAEAAGNVRSP