mRNA_H-canaliculatus_F_contig14998.3747.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14998.3747.1
Unique NamemRNA_H-canaliculatus_F_contig14998.3747.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14998.3747.1 vs. uniprot
Match: D7G8F2_ECTSI (Decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F2_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.130e-9
Identity = 45/94 (47.87%), Postives = 53/94 (56.38%), Query Frame = 3 
Query:   45 ELLVILMACELMQPSSAFVDGSTRARTGCLGVGQRRVASGTIVFSNRNR----AATAQVCCFAMETAQPSAGLDQDSTPLVDALAEAAGNVRSP 314
            EL+ +LM C L  PSS+F+    R       V        T VF  R R     A  +V C   +T + SAGL+QDSTPLVDALAEAAGNVRSP
Sbjct:    5 ELICVLMVCALACPSSSFLLDCIRTANTAPAV--------TAVFLGRGRRPRPTAVQRVRCLRTQT-RASAGLNQDSTPLVDALAEAAGNVRSP 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14998.3747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8F2_ECTSI1.130e-947.87Decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14998contigH-canaliculatus_F_contig14998:1645..1958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog2880.D7G8F2
EggNOG free text desc.arginine decarboxylase activity
EggNOG OGs2QWPE@2759,COG1982@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Exons1
Model size314
Cds size288
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.428879-UTR-H-canaliculatus_F_contig14998:1644..16701622929239.428879-UTR-H-canaliculatus_F_contig14998:1644..1670Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14998 1645..1670 +
1696845730.9916205-UTR-H-canaliculatus_F_contig14998:1644..16701696845730.9916205-UTR-H-canaliculatus_F_contig14998:1644..1670Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14998 1645..1670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.4399116-CDS-H-canaliculatus_F_contig14998:1670..19581622929239.4399116-CDS-H-canaliculatus_F_contig14998:1670..1958Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14998 1671..1958 +
1696845731.0011492-CDS-H-canaliculatus_F_contig14998:1670..19581696845731.0011492-CDS-H-canaliculatus_F_contig14998:1670..1958Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14998 1671..1958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14998.3747.1prot_H-canaliculatus_F_contig14998.3747.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14998 1671..1958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14998.3747.1

>prot_H-canaliculatus_F_contig14998.3747.1 ID=prot_H-canaliculatus_F_contig14998.3747.1|Name=mRNA_H-canaliculatus_F_contig14998.3747.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=96bp
MGFRGCELLVILMACELMQPSSAFVDGSTRARTGCLGVGQRRVASGTIVF
SNRNRAATAQVCCFAMETAQPSAGLDQDSTPLVDALAEAAGNVRSP
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mRNA from alignment at H-canaliculatus_F_contig14998:1645..1958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14998.3747.1 ID=mRNA_H-canaliculatus_F_contig14998.3747.1|Name=mRNA_H-canaliculatus_F_contig14998.3747.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=314bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14998:1645..1958+ (Hapterophycus canaliculatus Oshoro5f female)
CTCACCTACCTCGCCGAGACGACAAGATGGGATTTCGAGGATGCGAGTTA
CTCGTCATTCTCATGGCTTGCGAGCTAATGCAACCAAGTTCGGCCTTCGT
TGATGGGAGCACCCGCGCCCGTACAGGTTGCCTTGGTGTAGGGCAGCGAC
GGGTTGCATCAGGAACGATCGTGTTCTCGAACAGGAATCGCGCCGCAACA
GCACAGGTCTGTTGCTTCGCAATGGAGACAGCACAGCCTTCTGCGGGGCT
CGATCAGGATTCAACTCCTCTCGTCGATGCTTTAGCAGAGGCTGCCGGGA
ATGTACGGTCTCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14998:1645..1958+

>mRNA_H-canaliculatus_F_contig14998.3747.1 ID=mRNA_H-canaliculatus_F_contig14998.3747.1|Name=mRNA_H-canaliculatus_F_contig14998.3747.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14998:1645..1958+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGATTTCGAGGATGCGAGTTACTCGTCATTCTCATGGCTTGCGAGCT
AATGCAACCAAGTTCGGCCTTCGTTGATGGGAGCACCCGCGCCCGTACAG
GTTGCCTTGGTGTAGGGCAGCGACGGGTTGCATCAGGAACGATCGTGTTC
TCGAACAGGAATCGCGCCGCAACAGCACAGGTCTGTTGCTTCGCAATGGA
GACAGCACAGCCTTCTGCGGGGCTCGATCAGGATTCAACTCCTCTCGTCG
ATGCTTTAGCAGAGGCTGCCGGGAATGTACGGTCTCCCATGGGATTTCGA
GGATGCGAGTTACTCGTCATTCTCATGGCTTGCGAGCTAATGCAACCAAG
TTCGGCCTTCGTTGATGGGAGCACCCGCGCCCGTACAGGTTGCCTTGGTG
TAGGGCAGCGACGGGTTGCATCAGGAACGATCGTGTTCTCGAACAGGAAT
CGCGCCGCAACAGCACAGGTCTGTTGCTTCGCAATGGAGACAGCACAGCC
TTCTGCGGGGCTCGATCAGGATTCAACTCCTCTCGTCGATGCTTTAGCAG
AGGCTGCCGGGAATGTACGGTCTCCC
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