prot_H-canaliculatus_F_contig14980.3743.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig14980.3743.1
Unique Nameprot_H-canaliculatus_F_contig14980.3743.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length219
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14980.3743.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 2.240e-78
Identity = 153/218 (70.18%), Postives = 159/218 (72.94%), Query Frame = 0 
Query:    2 RRLSSAVLERFETAVLDMDEPGIAATCPLLAPLGLATQGQELYLGFARRALEAELEAAGVGDDSSTSSSPFSATQRLPAIYNVSAAFLRRWVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLERHLREKSVASWAAEGADGWGFGLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLGKADALLEELAVLTQHTESYDRFVRFLVMEV 219
            R LSSAVLERFETAVLDMDEPGIAA CPLLAPLGLAT+GQELYLGFARRALEAELE AG GD S        ATQ LPAIYN SAAFLRR VPVAAAGLAPCLGDVALVRVVTRECGDRAATVLE+HLRE SVASWAA+G +G                                         E+LGKADALLEELAVLTQHTESYDRFV+FLVMEV
Sbjct:  220 RGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELE-AGAGDGS------LPATQSLPAIYNTSAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLEKHLREHSVASWAADGVEG----------------------------------AAAAAAAEVLGKADALLEELAVLTQHTESYDRFVKFLVMEV 396
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BLAST of mRNA_H-canaliculatus_F_contig14980.3743.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.800e-21
Identity = 77/225 (34.22%), Postives = 104/225 (46.22%), Query Frame = 0 
Query:    1 QRRLSSAVLERFETAVLDMDEPGIAATCPLLAPLGLATQGQELYLGFARRALEAELEAAGVGDDSSTSSSPFSATQRLPAIYNVSAAFLRRWVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLERHLREKSVA------SWAAEGADGWGFGLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLGKADALLEELAVLTQHTESYDRFVRFLVMEV 219
            + RL   VL R   AV   +   +   CPLL PLGLA +G  +Y  FA R L+  L      D     +S   A Q LP IYN +A FL+R +P+ + G      DV+L+R+V REC D A  V+ R L +K VA      + A+ G DG    L G                                    +G+ D L++ LA++ QHTESYDRF+R +  EV
Sbjct:  234 EARLKETVLRRVHLAVSRSELDDVFKFCPLLGPLGLAKEGASIYESFAERLLKEGL------DPLVAETSKLPAVQLLPKIYNTAAGFLQRHLPLVSHGFKQVDADVSLIRLVQRECEDAAIPVIRRFLEDKGVAEKCRAVAEASRGDDG----LDGGAFHARKEGGHRRRGAQASGGEGEEALP--------IGEMDGLMDALALVIQHTESYDRFLRHVAAEV 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14980.3743.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE2.240e-7870.18Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A4D9D1B9_9STRA1.800e-2134.22Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013167Conserved oligomeric Golgi complex, subunit 4PFAMPF08318COG4coord: 3..213
e-value: 1.6E-7
score: 30.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14980contigH-canaliculatus_F_contig14980:626..1680 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14980.3743.1mRNA_H-canaliculatus_F_contig14980.3743.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig14980 626..1680 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig14980.3743.1 ID=prot_H-canaliculatus_F_contig14980.3743.1|Name=mRNA_H-canaliculatus_F_contig14980.3743.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=219bp
QRRLSSAVLERFETAVLDMDEPGIAATCPLLAPLGLATQGQELYLGFARR
ALEAELEAAGVGDDSSTSSSPFSATQRLPAIYNVSAAFLRRWVPVAAAGL
APCLGDVALVRVVTRECGDRAATVLERHLREKSVASWAAEGADGWGFGLG
GRGGGGGGVGGGGGVTGDAGGADGSASAAAAADAAELLGKADALLEELAV
LTQHTESYDRFVRFLVMEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013167COG_su4