mRNA_H-canaliculatus_F_contig14980.3743.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14980.3743.1
Unique NamemRNA_H-canaliculatus_F_contig14980.3743.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14980.3743.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 2.240e-78
Identity = 153/218 (70.18%), Postives = 159/218 (72.94%), Query Frame = 1 
Query:    4 RRLSSAVLERFETAVLDMDEPGIAATCPLLAPLGLATQGQELYLGFARRALEAELEAAGVGDDSSTSSSPFSATQRLPAIYNVSAAFLRRWVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLERHLREKSVASWAAEGADGWGFGLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLGKADALLEELAVLTQHTESYDRFVRFLVMEV 657
            R LSSAVLERFETAVLDMDEPGIAA CPLLAPLGLAT+GQELYLGFARRALEAELE AG GD S        ATQ LPAIYN SAAFLRR VPVAAAGLAPCLGDVALVRVVTRECGDRAATVLE+HLRE SVASWAA+G +G                                         E+LGKADALLEELAVLTQHTESYDRFV+FLVMEV
Sbjct:  220 RGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELE-AGAGDGS------LPATQSLPAIYNTSAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLEKHLREHSVASWAADGVEG----------------------------------AAAAAAAEVLGKADALLEELAVLTQHTESYDRFVKFLVMEV 396
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BLAST of mRNA_H-canaliculatus_F_contig14980.3743.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.800e-21
Identity = 77/225 (34.22%), Postives = 104/225 (46.22%), Query Frame = 1 
Query:    1 QRRLSSAVLERFETAVLDMDEPGIAATCPLLAPLGLATQGQELYLGFARRALEAELEAAGVGDDSSTSSSPFSATQRLPAIYNVSAAFLRRWVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLERHLREKSVA------SWAAEGADGWGFGLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLGKADALLEELAVLTQHTESYDRFVRFLVMEV 657
            + RL   VL R   AV   +   +   CPLL PLGLA +G  +Y  FA R L+  L      D     +S   A Q LP IYN +A FL+R +P+ + G      DV+L+R+V REC D A  V+ R L +K VA      + A+ G DG    L G                                    +G+ D L++ LA++ QHTESYDRF+R +  EV
Sbjct:  234 EARLKETVLRRVHLAVSRSELDDVFKFCPLLGPLGLAKEGASIYESFAERLLKEGL------DPLVAETSKLPAVQLLPKIYNTAAGFLQRHLPLVSHGFKQVDADVSLIRLVQRECEDAAIPVIRRFLEDKGVAEKCRAVAEASRGDDG----LDGGAFHARKEGGHRRRGAQASGGEGEEALP--------IGEMDGLMDALALVIQHTESYDRFLRHVAAEV 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14980.3743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE2.240e-7870.18Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A4D9D1B9_9STRA1.800e-2134.22Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14980contigH-canaliculatus_F_contig14980:626..1680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score267.7
Seed ortholog evalue4.8e-69
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.201908-CDS-H-canaliculatus_F_contig14980:625..9021622929239.201908-CDS-H-canaliculatus_F_contig14980:625..902Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14980 626..902 +
1696845730.9113684-CDS-H-canaliculatus_F_contig14980:625..9021696845730.9113684-CDS-H-canaliculatus_F_contig14980:625..902Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14980 626..902 +
1622929239.2150376-CDS-H-canaliculatus_F_contig14980:1300..16801622929239.2150376-CDS-H-canaliculatus_F_contig14980:1300..1680Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14980 1301..1680 +
1696845730.9260113-CDS-H-canaliculatus_F_contig14980:1300..16801696845730.9260113-CDS-H-canaliculatus_F_contig14980:1300..1680Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14980 1301..1680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14980.3743.1prot_H-canaliculatus_F_contig14980.3743.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14980 626..1680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14980.3743.1

>prot_H-canaliculatus_F_contig14980.3743.1 ID=prot_H-canaliculatus_F_contig14980.3743.1|Name=mRNA_H-canaliculatus_F_contig14980.3743.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=219bp
QRRLSSAVLERFETAVLDMDEPGIAATCPLLAPLGLATQGQELYLGFARR
ALEAELEAAGVGDDSSTSSSPFSATQRLPAIYNVSAAFLRRWVPVAAAGL
APCLGDVALVRVVTRECGDRAATVLERHLREKSVASWAAEGADGWGFGLG
GRGGGGGGVGGGGGVTGDAGGADGSASAAAAADAAELLGKADALLEELAV
LTQHTESYDRFVRFLVMEV
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mRNA from alignment at H-canaliculatus_F_contig14980:626..1680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14980.3743.1 ID=mRNA_H-canaliculatus_F_contig14980.3743.1|Name=mRNA_H-canaliculatus_F_contig14980.3743.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1055bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14980:626..1680+ (Hapterophycus canaliculatus Oshoro5f female)
CAACGAAGGCTGTCATCGGCGGTGCTGGAGCGCTTCGAGACCGCCGTGCT
GGACATGGACGAACCGGGGATAGCCGCCACCTGTCCCCTGCTCGCCCCTC
TCGGCCTCGCCACGCAGGGCCAGGAGCTGTACCTCGGCTTCGCACGGCGA
GCGCTGGAGGCCGAGCTGGAAGCAGCGGGGGTTGGCGACGACTCCTCGAC
GTCATCGTCGCCTTTCTCTGCAACCCAGCGCTTACCCGCAATTTACAACG
TGTCGGCAGCGTTTCTGAGGAGGTGGGGTGGTGGTTGTCCGAGCAGGGTT
TGGTGTGGGGGGCGGCGGGGGGGGGCGGCGGGGGGGGCGGGGAATGGTTG
TGGTTTATTTCGCTGGTGCTGCGTGTCCTGCAGTGATCTTTACCATTCGA
GCCTTCTTGCCATTTTGTCGTCTTGGTCACTTCATCGGGTAAGGAGTCAA
CCGATGGCTTGCCTGGGCGCGTATCTCCATAACTTCTCTCTCCACTTCTG
ACCCACCGGTCGCCGCGTCGGGCTTGCGCCGACCTCCACGTGACCTATTC
CACACTCCAACAGCCGTCAATTAACCTTTGATACGCTCTCCCACATCTGT
TCCCCATCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTACTTCGTGCGGAC
CCCCTTCTCACCGGTCCCAGGCAAGTCCCGGTGGCGGCGGCGGGCCTGGC
GCCGTGCCTCGGGGACGTAGCCCTCGTCCGCGTCGTCACCAGGGAGTGCG
GCGACCGCGCGGCGACCGTTCTCGAGAGACATCTGCGGGAAAAGTCGGTC
GCCTCTTGGGCGGCGGAGGGCGCGGACGGTTGGGGTTTCGGCCTGGGGGG
GCGCGGCGGCGGCGGCGGAGGAGTGGGAGGGGGAGGGGGGGTGACGGGAG
ACGCGGGCGGGGCGGACGGCAGCGCCTCGGCCGCCGCCGCCGCCGACGCC
GCGGAGCTGCTGGGGAAGGCGGACGCGCTGCTGGAGGAGCTCGCCGTTCT
GACCCAGCACACGGAGAGCTACGACCGTTTCGTCAGGTTTTTGGTGATGG
AGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14980:626..1680+

>mRNA_H-canaliculatus_F_contig14980.3743.1 ID=mRNA_H-canaliculatus_F_contig14980.3743.1|Name=mRNA_H-canaliculatus_F_contig14980.3743.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1314bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14980:626..1680+ (Hapterophycus canaliculatus Oshoro5f female)
CAACGAAGGCTGTCATCGGCGGTGCTGGAGCGCTTCGAGACCGCCGTGCT
GGACATGGACGAACCGGGGATAGCCGCCACCTGTCCCCTGCTCGCCCCTC
TCGGCCTCGCCACGCAGGGCCAGGAGCTGTACCTCGGCTTCGCACGGCGA
GCGCTGGAGGCCGAGCTGGAAGCAGCGGGGGTTGGCGACGACTCCTCGAC
GTCATCGTCGCCTTTCTCTGCAACCCAGCGCTTACCCGCAATTTACAACG
TGTCGGCAGCGTTTCTGAGGAGGTGGGCAACGAAGGCTGTCATCGGCGGT
GCTGGAGCGCTTCGAGACCGCCGTGCTGGACATGGACGAACCGGGGATAG
CCGCCACCTGTCCCCTGCTCGCCCCTCTCGGCCTCGCCACGCAGGGCCAG
GAGCTGTACCTCGGCTTCGCACGGCGAGCGCTGGAGGCCGAGCTGGAAGC
AGCGGGGGTTGGCGACGACTCCTCGACGTCATCGTCGCCTTTCTCTGCAA
CCCAGCGCTTACCCGCAATTTACAACGTGTCGGCAGCGTTTCTGAGGAGG
TGGGTCCCGGTGGCGGCGGCGGGCCTGGCGCCGTGCCTCGGGGACGTAGC
CCTCGTCCGCGTCGTCACCAGGGAGTGCGGCGACCGCGCGGCGACCGTTC
TCGAGAGACATCTGCGGGAAAAGTCGGTCGCCTCTTGGGCGGCGGAGGGC
GCGGACGGTTGGGGTTTCGGCCTGGGGGGGCGCGGCGGCGGCGGCGGAGG
AGTGGGAGGGGGAGGGGGGGTGACGGGAGACGCGGGCGGGGCGGACGGCA
GCGCCTCGGCCGCCGCCGCCGCCGACGCCGCGGAGCTGCTGGGGAAGGCG
GACGCGCTGCTGGAGGAGCTCGCCGTTCTGACCCAGCACACGGAGAGCTA
CGACCGTTTCGTCAGGTTTTTGGTGATGGAGGTATCCCGGTGGCGGCGGC
GGGCCTGGCGCCGTGCCTCGGGGACGTAGCCCTCGTCCGCGTCGTCACCA
GGGAGTGCGGCGACCGCGCGGCGACCGTTCTCGAGAGACATCTGCGGGAA
AAGTCGGTCGCCTCTTGGGCGGCGGAGGGCGCGGACGGTTGGGGTTTCGG
CCTGGGGGGGCGCGGCGGCGGCGGCGGAGGAGTGGGAGGGGGAGGGGGGG
TGACGGGAGACGCGGGCGGGGCGGACGGCAGCGCCTCGGCCGCCGCCGCC
GCCGACGCCGCGGAGCTGCTGGGGAAGGCGGACGCGCTGCTGGAGGAGCT
CGCCGTTCTGACCCAGCACACGGAGAGCTACGACCGTTTCGTCAGGTTTT
TGGTGATGGAGGTA
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