prot_H-canaliculatus_F_contig14942.3723.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig14942.3723.1
Unique Nameprot_H-canaliculatus_F_contig14942.3723.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length167
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14942.3723.1 vs. uniprot
Match: D7FQT4_ECTSI (U1 small nuclear ribonucleoprotein C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT4_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.970e-7
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0 
Query:    1 GWKHTDNVKLHYKQFLDDFVKNQAANGG 28
            GWKHTDNVKLHYKQFL+ FV+ QAANGG
Sbjct:   27 GWKHTDNVKLHYKQFLEKFVQQQAANGG 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14942.3723.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQT4_ECTSI1.970e-785.71U1 small nuclear ribonucleoprotein C n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14942contigH-canaliculatus_F_contig14942:1095..2215 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14942.3723.1mRNA_H-canaliculatus_F_contig14942.3723.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig14942 1095..2215 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig14942.3723.1 ID=prot_H-canaliculatus_F_contig14942.3723.1|Name=mRNA_H-canaliculatus_F_contig14942.3723.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=167bp
GWKHTDNVKLHYKQFLDDFVKNQAANGGDVGSGQMSTGPMPMGPQAGPRG
PMGSGSLGMGAMNNSLMPGGMMGGGPPMGGGPMMSGPRPGGFMGGGPPMG
GGPMMGAPRPGGFMGGLPPMGGGPMMGGPRPGAFMGPGPGPMGGGPPRGP
MPPQAPPINGNGPGTA*
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