prot_H-canaliculatus_F_contig1470.3590.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1470.3590.1
Unique Nameprot_H-canaliculatus_F_contig1470.3590.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length460
Homology
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Match: D8LCG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG9_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 2.080e-85
Identity = 150/200 (75.00%), Postives = 159/200 (79.50%), Query Frame = 0
Query:    1 MKEEEFDTALVAAAAEAGMGERGGSWDLMYFTPGKMSKKRGRLTGTAYLHIDRGRGASADLSLIKLRAAVSASSALAPXXXXXXXXXXPADKRQSSDTSNSAAMAAVGPVVEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPAPPLPSADVQADIKESEGKEEPKPQNALLDFLKERGAKRVRDSQRAAALGS 200
            MKEEEF  AL AAA++AGMGERGGSWDLMYFTPGKMSKKRGR+TGTAYLHIDR RGA+ADLSL KLRAAVSAS AL P                          A  GP VEAAPFQKLFKQKPKRDVR GTIEKD  Y+AFC ALQ+PA PLPSADVQADI+ESEGKEEPKPQNALLDFL+ERGA+RVRDSQRAAALGS
Sbjct:   37 MKEEEFVEALAAAASDAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLHIDRERGANADLSLSKLRAAVSASDALTPAAEPASSSSKEGSXXXXXXXXXXXXTATAGPTVEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEEPKPQNALLDFLRERGARRVRDSQRAAALGS 236          
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Match: A0A836C7E8_9STRA (Smg4_UPF3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7E8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.580e-22
Identity = 77/198 (38.89%), Postives = 108/198 (54.55%), Query Frame = 0
Query:    4 EEFDTALVAAAAEAGMGERGGSWDLMYFTPGKMSKKRGRLTGTAYLHIDRGRGASADLSLIKLRAAVSASSALAPXXXXXXXXXXPADKRQSSDTSNSAAMAAVGPVVEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPAPPLPSADVQADIKESEGKEEPK-----------PQNALLDFLKERGAKRVR 190
            E+F++ +   AAEA   ER  ++ ++Y++PGK+SKKRG++TG  YL ++R  G       +   AAV A +    XXXXX             DT   A   A  P+VE AP+Q++F+ KP+RD   GT E+DPDYRAFC AL+ P   LPSADVQ D + +                  P  AL+ +++ER A R R
Sbjct:   77 EDFNSLMETVAAEAARAERPLAFTVLYYSPGKVSKKRGKITGAGYLVVERAAG-------VTPAAAVDAVAXXXXXXXXXF------------DTHARADPDAARPLVELAPYQRVFRTKPRRDNLDGTFERDPDYRAFCAALERPVDKLPSADVQLDQRAAXXXXXXXXXXXXXXXXGAPVAALVQYIRERRAARAR 255          
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Match: A0A8K1FA17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA17_PYTOL)

HSP 1 Score: 73.9 bits (180), Expect = 1.560e-10
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 0
Query:  111 VEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPAPPLPSADVQADIKESEGKEEPKPQNALLDFLKER 184
            V+ APFQK+ ++K ++D + GTI++DPD+ AF   L  P   LPSADV AD KESEG E  KP  AL+ +L ER
Sbjct:  183 VDFAPFQKIPREKARKDTKIGTIDRDPDFLAFLEELAKPNEKLPSADVVADAKESEGAE--KPVAALVQYLNER 254          
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Match: A0A2D4CDX7_PYTIN (Smg4_UPF3 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDX7_PYTIN)

HSP 1 Score: 68.6 bits (166), Expect = 6.880e-9
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 0
Query:  111 VEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPAPPLPSADVQADIKESEGKEEPKPQNALLDFLKER 184
            V+ APFQK+ ++K +RD + GTIEKDP+Y AF   L  PA  LPSAD+  D K+    E  KP  AL+ +L ER
Sbjct:  198 VDFAPFQKIPREKQRRDPKVGTIEKDPEYLAFLEDLAKPAEKLPSADLALDSKDGAAAE--KPVAALVQYLNER 269          
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Match: A0A3R7HC05_9STRA (Smg4_UPF3 domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HC05_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.330e-7
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0
Query:  111 VEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPAPPLPSADVQADIKESEGKEEPKPQNALLDFLKERGAK 187
            VE APFQK+ ++K ++D + GTI++DP+Y AF   L  P   LPSA+   D+ E E  E  +P  AL+ +L ER  K
Sbjct:  344 VEFAPFQKIPREKQRKDAKVGTIDRDPEYTAFLEELAKPKDKLPSAEAAVDMAEGESVE--RPVAALVKYLNERKGK 418          
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Match: W2PRS1_PHYPN (Smg4_UPF3 domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PRS1_PHYPN)

HSP 1 Score: 64.7 bits (156), Expect = 1.520e-7
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 0
Query:  111 VEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPAPPLPSADVQADIKESEGKEEPKPQNALLDFLKER 184
            VE APFQK+ ++K ++D + GTI++DP+Y AF   L  P   LPSA+   DI E E  E  KP  AL+ +L ER
Sbjct:  172 VEFAPFQKVPREKQRKDAKVGTIDRDPEYIAFLEELAKPKDKLPSAEALVDIAEGETVE--KPVAALVKYLNER 243          
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Match: H3H2I9_PHYRM (Smg4_UPF3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2I9_PHYRM)

HSP 1 Score: 64.3 bits (155), Expect = 1.930e-7
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 0
Query:  111 VEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPAPPLPSADVQADIKESEGKEEPKPQNALLDFLKER 184
            VE APFQK+ ++K ++D + GTI++DP+Y AF   L  P   LPSA+   D+ E E  E  KP  AL+ +L ER
Sbjct:  161 VEFAPFQKIPREKQRKDAKMGTIDRDPEYMAFLEELAKPKDKLPSAEAVVDMAEGETVE--KPVAALVKYLNER 232          
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Match: D0P3T5_PHYIT (Smg4_UPF3 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P3T5_PHYIT)

HSP 1 Score: 63.9 bits (154), Expect = 2.710e-7
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 0
Query:  111 VEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPAPPLPSADVQADIKESEGKEEPKPQNALLDFLKER 184
            VE APFQK+ ++K ++DV+ GTI+ DP+Y AF   L  P   LPSA+   D+ E E  E  KP  AL+ +L ER
Sbjct:  171 VEFAPFQKIPREKQRKDVKVGTIDCDPEYLAFLEELAKPKDKLPSAEALVDMAEGETLE--KPVAALVKYLNER 242          
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Match: A0A426XHW7_ENSVE (Smg4_UPF3 domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426XHW7_ENSVE)

HSP 1 Score: 60.8 bits (146), Expect = 2.860e-7
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0
Query:  110 VVEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPAPPLPSADVQADIKESE----GKEEPKPQNALLDFLKERGA 186
            +VE AP Q++ KQ PK+DVR GT+ KDP+Y  F   +  P   LPSA++Q + KE+E     KE P     L+DF++ + A
Sbjct:   89 LVEYAPSQRVPKQCPKKDVREGTLSKDPEYMEFLEIISKPLEHLPSAEIQLERKEAERAGSAKETPIV-TPLMDFVRRKRA 168          
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Match: A0A3M6VSA1_9STRA (Smg4_UPF3 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSA1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.370e-7
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 0
Query:  111 VEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPAPPLPSADVQADIKESEGKEEPKPQNALLDFLKER 184
            VE APFQK+ ++K ++D + GTI++DP+Y AF   L  P   LPSA+   D+ E E  E  KP  AL+ +L ER
Sbjct:  165 VEFAPFQKIPREKQRKDAKVGTIDRDPEYVAFLNELAKPKDKLPSAEPVVDMAEGETVE--KPVAALVKYLNER 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1470.3590.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LCG9_ECTSI2.080e-8575.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C7E8_9STRA8.580e-2238.89Smg4_UPF3 domain-containing protein n=1 Tax=Tribon... [more]
A0A8K1FA17_PYTOL1.560e-1052.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CDX7_PYTIN6.880e-950.00Smg4_UPF3 domain-containing protein n=1 Tax=Pythiu... [more]
A0A3R7HC05_9STRA1.330e-744.16Smg4_UPF3 domain-containing protein n=4 Tax=Phytop... [more]
W2PRS1_PHYPN1.520e-747.30Smg4_UPF3 domain-containing protein n=8 Tax=Phytop... [more]
H3H2I9_PHYRM1.930e-745.95Smg4_UPF3 domain-containing protein n=1 Tax=Phytop... [more]
D0P3T5_PHYIT2.710e-747.30Smg4_UPF3 domain-containing protein n=2 Tax=Phytop... [more]
A0A426XHW7_ENSVE2.860e-743.21Smg4_UPF3 domain-containing protein n=1 Tax=Ensete... [more]
A0A3M6VSA1_9STRA3.370e-745.95Smg4_UPF3 domain-containing protein n=2 Tax=Perono... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 293..313
IPR005120UPF3 domainPFAMPF03467Smg4_UPF3coord: 108..184
e-value: 7.5E-13
score: 48.9
IPR039722Nonsense-mediated mRNA decay protein 3PANTHERPTHR13112UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEINcoord: 109..457

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1470contigH-canaliculatus_F_contig1470:1120..3722 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1470.3590.1mRNA_H-canaliculatus_F_contig1470.3590.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1470 1090..4029 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1470.3590.1 ID=prot_H-canaliculatus_F_contig1470.3590.1|Name=mRNA_H-canaliculatus_F_contig1470.3590.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=460bp
MKEEEFDTALVAAAAEAGMGERGGSWDLMYFTPGKMSKKRGRLTGTAYLH
IDRGRGASADLSLIKLRAAVSASSALAPGAAGSGSSASPADKRQSSDTSN
SAAMAAVGPVVEAAPFQKLFKQKPKRDVRTGTIEKDPDYRAFCTALQAPA
PPLPSADVQADIKESEGKEEPKPQNALLDFLKERGAKRVRDSQRAAALGS
SASSRGSGGGGSRRSSGSSSGGGAGSGTAAAAAAVAASSATTGKKSSSSS
SSIPGGSSSSSRPAAQSPAPSSRGAHKATTTGSGVSVMSASYRAALEAKA
AAAEAAAATAAAKTKATKATTTAPVKQRGPSEAAKGRSSSARGGGGGASG
SGSGSRAAGKSGNSGAASAAPPAPRILTRAKDSGAKPSADASGSSVQSPT
TASASSSRSGGGSGSGSGSGSGSGNVSGSVDSGRKGGSSGPKGRAGGGKS
SSGSSRSKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039722Upf3
IPR005120UPF3_dom