prot_H-canaliculatus_F_contig1454.3510.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1454.3510.1
Unique Nameprot_H-canaliculatus_F_contig1454.3510.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length110
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1454.3510.1 vs. uniprot
Match: A0A6H5JH10_9PHAE (BRCA-2_helical domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH10_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.010e-20
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 0 
Query:   40 DDCVTYRVYLTDASGACVVLEKRIKQELARHHRVLRCAPGSCWAIVNAGRHHGG--DAAA---MSPSSARGVP 107
            D+ VTYRVY+T+ SG+C VL KR++ ELARHHR+LR APG+CWAIVNAGRH+GG  DAAA     PS+  G+P
Sbjct: 3964 DERVTYRVYMTEPSGSCAVLTKRVRPELARHHRILRSAPGACWAIVNAGRHNGGGGDAAAGGDWHPSAPGGLP 4036
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BLAST of mRNA_H-canaliculatus_F_contig1454.3510.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.300e-19
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 0 
Query:   40 DDCVTYRVYLTDASGACVVLEKRIKQELARHHRVLRCAPGSCWAIVNAGRHHG 92
            D+ VTYRVY+T+ SGAC VL KR++ ELARHHR+LR APG+CWAIVNAGRH+G
Sbjct: 3570 DERVTYRVYMTEPSGACAVLTKRVRPELARHHRILRSAPGACWAIVNAGRHNG 3622
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1454.3510.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH10_9PHAE6.010e-2064.38BRCA-2_helical domain-containing protein n=1 Tax=E... [more]
D8LCN1_ECTSI5.300e-1973.58Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1454contigH-canaliculatus_F_contig1454:4051..4476 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1454.3510.1mRNA_H-canaliculatus_F_contig1454.3510.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1454 4051..4476 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1454.3510.1 ID=prot_H-canaliculatus_F_contig1454.3510.1|Name=mRNA_H-canaliculatus_F_contig1454.3510.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
STSSSSSTTHEVFATVDSVVRGNPAGGGGVGATAAAAPCDDCVTYRVYLT
DASGACVVLEKRIKQELARHHRVLRCAPGSCWAIVNAGRHHGGDAAAMSP
SSARGVPTSS
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