prot_H-canaliculatus_F_contig1454.3509.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1454.3509.1
Unique Nameprot_H-canaliculatus_F_contig1454.3509.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length141
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1454.3509.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.270e-32
Identity = 81/144 (56.25%), Postives = 93/144 (64.58%), Query Frame = 0 
Query:    9 RPGDAESARPGCGEPLLPRGRRHALPPMVGVLKIWAPNEATAALLLEGAELRLHSVTASTCHHHIPGCTLEISAGRQTKIEVINS---PSSAVGGAGAGKMA----GVAGKHFGADQGPPFQ-RFAPRCCTPLPALAP---RGS 141
            R G A +  PG GE  +  GRR  LPP+  V+K+WAPNEATA LLLEGA LRLHSVTAS C H +PGC+LE+SAGRQTKIEVI +   P    GG G G  A    G  G + GA++ P F  RF PR  TPL AL P   RGS
Sbjct: 3277 RRGGAGTRGPGGGEEFV--GRRSGLPPISAVVKVWAPNEATAGLLLEGAVLRLHSVTASVCRHRVPGCSLELSAGRQTKIEVIGTTTTPGFGTGGDGGGVPARPTGGEGGDYLGAERTPFFSPRFVPRRYTPLSALVPPPLRGS 3418
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1454.3509.1 vs. uniprot
Match: A0A6H5JH10_9PHAE (BRCA-2_helical domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH10_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.380e-30
Identity = 76/130 (58.46%), Postives = 88/130 (67.69%), Query Frame = 0 
Query:   19 GCGEPLLPRGRRHALPPMVGVLKIWAPNEATAALLLEGAELRLHSVTASTCHHHIPGCTLEISAGRQTKIEVINSPSSAVGGAG---AGKMAGVAGKHFGADQGPPFQ-RFAPRCCTPLPALAP---RGS 141
            G GE  +  GRR  LPP++ V+K+WAPNEATA LLLEGA LRLHSVTAS C H +PGC+LE+SAGRQTKIEVI +  +A GG G   A   AG  G   G ++ P F  RF PR  TPL AL P   RGS
Sbjct: 3552 GGGEEFV--GRRSGLPPILAVVKVWAPNEATAGLLLEGAVLRLHSVTASVCRHRVPGCSLELSAGRQTKIEVIGT--TATGGGGGVLARPPAGEGGHDLGGERTPFFTPRFLPRRYTPLSALVPPPLRGS 3677
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1454.3509.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN1_ECTSI2.270e-3256.25Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JH10_9PHAE2.380e-3058.46BRCA-2_helical domain-containing protein n=1 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 29..98
e-value: 1.4E-6
score: 30.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1454contigH-canaliculatus_F_contig1454:3056..3900 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1454.3509.1mRNA_H-canaliculatus_F_contig1454.3509.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1454 3056..3901 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1454.3509.1 ID=prot_H-canaliculatus_F_contig1454.3509.1|Name=mRNA_H-canaliculatus_F_contig1454.3509.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=141bp
GDPAPQDDRPGDAESARPGCGEPLLPRGRRHALPPMVGVLKIWAPNEATA
ALLLEGAELRLHSVTASTCHHHIPGCTLEISAGRQTKIEVINSPSSAVGG
AGAGKMAGVAGKHFGADQGPPFQRFAPRCCTPLPALAPRGS
back to top