prot_H-canaliculatus_F_contig14502.3495.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig14502.3495.1
Unique Nameprot_H-canaliculatus_F_contig14502.3495.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length42
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14502.3495.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..41
e-value: 1.4E-9
score: 39.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..29
e-value: 1.7E-5
score: 22.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 28..41
score: 5.053
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..27
score: 8.923

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14502contigH-canaliculatus_F_contig14502:2030..2155 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14502.3495.1mRNA_H-canaliculatus_F_contig14502.3495.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig14502 2030..2170 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig14502.3495.1 ID=prot_H-canaliculatus_F_contig14502.3495.1|Name=mRNA_H-canaliculatus_F_contig14502.3495.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=42bp
MEACGRAGQWNSALRLLAEVRDMGLHPDAFTLNAVMDALGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf